Restoring messages from backup-can "add" to mail but can't "add" to .Mac

Hello!
I posted this post in the .Mac email forum, but a fellow user suggested putting it here too, since it does seem to be a leopard-mail problem. Any help is very much appreciated.
I had some problems on my MacBook (2.2 Ghz, 10.5.2, everything up to date), and ended up having my mail database go absolutely nuts - which was made worse when I accidentally forwarded my .Mac account to my IMAP Gmail account, so messages were being randomly duplicated between the servers. Furthermore, if I tried to delete an email, it would disappear from one, only to re-appear twice over as it was forwarded back and forth. (Sheesh!)
In any case, I ended up turning off forwarding in all accounts, then deleting everything in .Mac, via the web interface, since the mess was too much to deal with. I then copied my Mail folder (User>Library>Mail) from my old G4 to my MacBook Pro, since it had been synced JUST before the glitch. The G4 is running Tiger, and Mail in Leopard wouln't import the messages via the File>Import menu option. So, I replaced the Leopard mail folder - replaced the folder from the MBP with the one from the G4 - and it imported the messages. (It went through the "Welcome to the new OS X Mail, let's update your library" screen).
Here's the problem: if I simply click "Get mail" after "importing" the old G4 mail folder, all messages will automatically erase themselves since it's syncing with .Mac. I thought "sync" meant "merge", not overwrite! (It certainly did in the past). Should I make an "on my mac" folder to store a copy of the messages while it "syncs", I can copy them into the .Mac inbox - and it will send them to the .Mac server. Even so, the next time I click "get messages", they will disappear - even from the "on my mac" folder!
Can I get the messages back onto .Mac? How?

The format of the disk is a Mac format. but that is irrelevant in a NAS device, as long as it offers SMB.. ie windows file network format.. you don't have to worry in the least how the files are stored on the drive.
But you cannot partition a TC.. it is as it is..
I have some iOS devices in addition including an AppleTV. Could this TC serve them as well as the Windows XP Pro PCs without having a Mac in my inventory ? (No time Machine.)
What are you expecting to serve to the iOS devices.. they are completely dumb.. they don't even know what the file system is without an APP.. and there is no Apple Format apps only SMB.. which is kind of interesting.
They are designed to work with iTunes.. but the TC is not an iTunes server strangely as lots of non-Apple products manage to make their NAS into ITunes servers. You can place the iTunes library on the TC but we don't recommend it due to the TC having no automated way to back itself up.. again unlike every other NAS out there. You can manually backup the TC via the USB.. it is slow and can only backup the whole disk.. even if you backed up the whole disk yesterday.. it has no ability to do incremental rsync or any other intelligent backup.

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