Restoring not restoring backed up information

I've restored my iPhone multiple times, but the last two times I've done it, I lost all of my favorites, settings, SMS messages, notes, stocks, weather settings, etc. I thought iTunes backed these up?
Both restores were running the latest iPhone firmware; I don't remember the iTunes version I was running my first restore, but the latest one was with iTunes 7.4.2.
Not a biggie, but it's pretty annoying. Is there some preference that I'm missing here?

Not quite accurate...Notes will not backup and is an issue for many users; Favorites is backed up in a sense because it links to explorer, using iTunes as a conduit, so those will come back. Stock, Weather and Clock are not backed up and you will always have to rebuild your choices. You will also have to always reset your passwords and iPhone settings for your preferences.... For a RESTORE using iTunes.
A RESET does not loose or change anything.

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