Restoring time machine to new MacBook Air

I have an older MBA that I am replacing with a brand new MBA.  I have been using a 1tb USB 3.0 Drive for backups.  The drive is partitioned in 2.  One is for my mac, one is for my wife's mac.  Both are encrytped.  I have had no problems running the backups.  Have been doing it this way for over a year.
Now I am having a problem.  When I load up the new mac it asks me where to transfer my info from.  I plug in the USB external and it is not recognized.
Tried it in the old mac and works like a charm. 
So my thinking is that the fact that it has 2 partitions or encrypted is causing an issue.  Could this be?  I started to decrypt the partition I want to use but this is going to take some time.  So while I am waiting I figure I would reach out here and see if anyone has any tips.  thanks so much!
SF

Although the documentation says you can copy Time Machine backups in the Finder, it's very slow and sometimes doesn't work at all.
Launch Disk Utility, open the built-in help, and search for the term "Duplicate." Follow the instructions. All existing data on the destination volume will be erased. That shouldn't be a problem, because you don't want to mix backup and non-backup data on the same drive anyway. Turn Time Machine OFF in its preference pane while copying the volume.

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