Retina Macbook Pro Graphics Jittery and worse with graphic switching turned off

I recently updated my computer I've been running Mountain Lion since it was available. But recently I performed the apple updates (which I don't think had anything to do with graphics) and suddenly everything is jittery, choppy and freaking out. I could be wrong but just suddenly the other day everything was super choppy.
Turning off "Automatic Graphics Switching" actually makes it every MORE jittery and choppy. I have to keep it on otherise I cannot even scroll a webpage with out the jittery making it impossible to see anything until I stop scrolling.
I notice the choppness when using expose, switching desktops, sometimes when scrolling in Google Chrome (Definately when the AGS is turned off), going into full screen app mode, and my top bar lags and you can see it flash when it refreshes itself.
I've tried clearing my PRAM with no luck and also tried an SMC reset, again with no luck.
Any thoughts? This is incredibly annoying!

I was able to fix the graphics by the following:
Creating a time machine backup
creating a bootable Mountain lion SD Memory card (I didn't have a USB sick available)
Booted into the recorvery manager
Erased the disk
reinstalled Mountain lion from the SD Card
Imported my data from Time machine. IMPORTANT: I didn't included any settings or "other settings" I just moved ONLY apps and files
My desktop appeared to be just as it was before, all apps and everything in the correct place (Go Time machine!)
Programs with issues after re-install:
AutoCAD 2013 for mac had some folder issue, AutoDesk had a workaround (I just uninstalled it, I don't use it much)
Virtual Box running a Windows 7 install completely crapped out (I never wanted to use Windows on my Mac anyways)
Mail app had to re-initialize, but all settings and account information was saved. Just had to wait for it to download the all the emails from my accounts again
That's all I found so far! I'm glad to have the screen animations back to felling like butter. Makes me love my Mac all over again!

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