Retina Macbook Pro sudden OSX issues

Hello guys, my retina macbook pro is driving me insane....
The computer will -simply- not execute a lot of my instructions, orders, or it simply -lol- ignores me. (skynet much?)
Anyway, it really is bothering me and here is a rundown of issues I have -so far- experienced
a) No control over resolution. I keep changing the resolution to "best for retina" but when I reboot , the system just doesnt care and changes the resolution to "more space".
b) No control over login items. No matter what changes I make, removing entirely the programs using the "minus" icon (not just unticking the items), it never makes a change when I reboot the computer. It still lists all the items I removed.
c) Finder boots up every time the computer is on and with the applications folder poping up. I tried removing the finder.plist from the preferences but it doesnt matter the computer still pops up the applications folder when I boot up.
d) I cannot even change the desktop background and make the option stick after a reboot. I choose another desktop and everything seems alright, then I reboot, and it switches back to the one it is "stuck" with.
e) Iphoto needs to repair the library every time I open the application.... no matter what...
f) I noticed that the system and specifically the kernel task is taking up much more ram than before. With a fresh boot my computer normally had 6.20 GB of free Ram available and kernel took up about 700MB. Now when I boot, the free memory has droped to around 5.40GB free and kernel takes up about 1.20 GB
I tried reseting the PRAM and SMC but without success.
Any help will be really appreciated, I know all things must be connected to each other, there must be a single reason that causes all this mess, probably a preferences file or system file... anyone can help me because this really drives me insane and I really dont want to go through all this reinstalling ML thing....

I am logged in as admin. I deleted some preference files for the login and now I do have control over login items, yet the rest of the issues still persist.
I am repairing permissions and yet no problem has been found. Only an ACL thing that was repaired as it says.

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AppleSupportNow
I always thought that keeping it plugged in nearly 24/7 can damage the battery too?
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A: its not turned off and in sleep mode ALL the time while plugged in
B: you dont unplug it ever couple weeks or so and drain the battery down to about 30 to 40%
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*Cycle count / use/ lifespan is one thing that cant be countered.
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Just use and enjoy your new macbook,
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http://www.apple.com/batteries/notebooks.html
http://support.apple.com/kb/HT1446
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Important useful info on your Lithium cells as compiled from battery experts:
Heat increases battery performance but shortens life by a factor of two for every 10°C increase above 25–30°C (18°F above 77–86°F). This is yet another important reason for the cooling of any notebook, not just keeping the processor and GPU cool. Mavericks lower power tasking (app nap) and combined with the cool running Haswell processor both greatly protect battery life on your Macbook now more than ever before.
Good news: *Mavericks not only increases a single charge cycle for longer battery use off a full charge,… but also prolongs the overall long term life of the LiPo battery in a Macbook by reducing the load conditions the battery experiences from heavy peak-use.
Counting cycles is not conclusive because a discharge may vary in depth and there are no clearly defined standards of what constitutes a charge cycle on a Lithium Ion battery empirically. Similar to a mechanical device that wears out faster with heavy use, so also does the depth of discharge (DoD) determine the cycle count.
The shorter the discharge (low DoD), the longer the battery will last. If at all possible, avoid full discharges and charge the battery more often between uses. Partial discharge on Li-ion is fine.
Frequent HIGH depth of discharge rates (draining the battery very low) on a Lithium battery will hasten the lowering of maximum battery capacity.
Although better performing when warm, lithium polymer batteries live longer when kept cool.
Lithium cells prefer draining conditions at a steady pace rather than fast pulsed or quick discharges, …this fact is idealized now with the Haswell and Mavericks app-nap low power tasking for battery use.
App nap:
http://www.apple.com/osx/advanced-technologies/

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