RGB images in Illustrator

Hey people,
I have the following problem: I have a RGB image from photoshop (its an  image from a microscope, basically black background with red and blue contours of a cell) and I copy/pasted this image to a RGB document in Illustrator. The image itself is rectangular, but I want to have it square. So, I created a square black box (black in this case was RGB black: R=0 G=0 B=0) and placed it behind my image.
On my screen it always looks as it should be, no differences in the the black colors of the microscopy image and the black object of Illustrator. Both  in the Illustrator file and after exporting it as a .pdf-file, there's no difference.
However, when I print the file with a color laser printer (it's a HP printer, can't specify it more, sorry for that), my image is like "real black" and the square box behind is more "greyish"...Changing the color profiles in the Illustrator file (from RGB to CMYK in Data-->Document color mode --> CMYK) or in the options when I export the pdf file didn't help, the files still look good on the screen, not on the printed paper. If there's any other way to solve it, I would be pleased to have the image not in the CMYK mode, because the contrast and general appearance of the images is worse in the CMYK profile.
I hope some of you guys can help me! It's incredibly important to solve that problem, because my images finally gonna get published, so I would really appreciate any help!
Best,
The_Bacillus_Guy

Wow, thank you for the incredibly fast responses!!!
@CHMprepress: I cannot adjust the image, it's for a scientific publication and the images itself have to be shown with as less modifications as possible!
@steve fairbairn: I've just measured the different shades of black and in both Photoshop and Illustrator. Both say it's: R=0 G=0 B=0. I also checked the color of the pasted image in Illustrator. It's all the same...
@badchess: The color settings are the same in both files. I basically used the pre-setting "North America General Purpose 2"
RGB: sRGB IEC61966-2.1
CMYK: U.S. Web Coated (SWOP) v2
Or do you think I have to change any of the other options?
Changing the appearance of black in the preferences doesn't help either...
Could it also be a problem of the printer?

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