RH7 Published output missing TOC

I recently upgraded from x5 to RH7 with Server 7.
I generate WebHelp Pro content.
There are some topics in my project that are flagged "Version
2" and a few lines at the text level are also flagged "Version 2".
None of the TOC books are flagged with any build tags.
When I generate the project with the coniditional build tag
set to "Not Verion 2" (meaning it should generate all topics and
content that is not flagged version 2) -the generated output shows
the TOC - and then if I take it all the way to the publish step -
the published output does not show the TOC .
If I generate and publish with the conditional build tag
"Version 2" (basically meaning it should include all content) -
then I can see the TOC in the generated and published output.
(Side note: I also have build takes for Online and Print -
but these are rarely used and do not seem to be involved in the
problem described above.)
I am viewing the output in IE7 - but since I can see the TOC
in the generated output and not in the published output - I think
the problem is not with the browser.....

To resolve the problem I went through each topic and turned
off the Topic-Level Build Tag - then republished. I did this until
I found the file that was preventing the TOC from displaying. Then
I replaced that file.

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