Safari 4.0.3 Top Sites and/or flash choke and I have to force quit.

I've tried multiple times all of the remedies I've seen on the discussion forums. Uninstalled an reinstalled flash. Dumped old internet plugins, reset, repair permissions, restart, trashed most safari folders, etc...in many different orders that have been recommended.
1- When I use Safari 4.0.3 Top Sites to go to some sites there is a frozen beach ball at about the time that the site is loading the advertising. This is predictable on sites with advertising. I have to force quit Safari. Then open it up again and back to normal. This is the usual procedure.
Sometimes the usual problem sites come up without a problem but that is very rare.
There is never a problem opening the sites using a saved bookmark.
I'm guessing that it's a page refresh/update problem withing Top Sites. Is it that it can't handle updating the animated ads when opening from Top Sites? Just looking for a solution.
Turning off Top Sites is not an answer. Avoiding using it is not an answer. I like the feature and want to continue to use it without problems.
2 - Rarely I've also had to force quit sometimes when clicking on a link on a page with advertising. It's as though I caught it (flash?) in some part of its cycle and it was off guard.
So, is it top sites, flash, scripting? I'd really like safari to work as it used to.

If turning that off improved the situation, this confirms that one of Safari's database files has become corrupt and is causing the crashing, and this would show up in your crash log as Thread 3 having crashed.
The blacklists from Google’s Safe Browsing Initiative (where Safari checks for 'fraudulent websites') are contained in a database cache file called SafeBrowsing.db - the file was created when you first launched Safari 3.2, and if you have the browser open, the file is modified approximately every 30 minutes.
In other words it is part of Safari's (version 3.2 onwards) anti-phishing security feature.
As an alternative to turning off 'Warn when visiting a fraudulent website', which will lose you that important security feature, you should delete that database file, (but first close Safari):
Home/Library/Caches/com.apple.Safari (this is a folder)/SafeBrowsing.db (although that location may be different on your system).
It will be recreated next time you open Safari, and will then start again collecting details of dodgy websites.
If you are interested:
How the Anti-Phishing feature of Safari 3 and 4 works:
http://www.macworld.com/article/137094/2008/11/safarisafebrowsing.html

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