Safari - New Windows Not Visible

I'm having problems with Safari - when I try to open a new window, either by File>New Window or by clicking a webpage link which opens in a new window, the new window does not appear.
The windows are opening somewhere as they show in the list when clicking on the WIndow tab (although selecting them in the list does nothing, nor does clicking the mouse side buttons to show all windows).
When quitting Safari I get the multiple pages open message, i.e. "There are 27 windows open in Safari. Do you want to quit anyway?".
Reopening Safari solves the problem only for a short time, as does a Restart.
I have recently (after major iTunes and kernel panic issues) run DiskWarrior, replaced and tested additional RAM, and repaired disk permissions to no avail.
Any ideas?

Deleted the three files suggested - now, on opening Safari I cannot expand the Safari page to fill the screen width (after a certain point dragging across from the corner, the header bar disappears and the page will not expand further).
I still have exactly the same problem with opening new windows - they appear in the list, but I can't view them.

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