Safari trouble login and bookmarks, question placing .apps in diff. folders

Hi, I am having a little bit of trouble with safari I need some help.
I downloaded opera to try out a different web browser... all was well.. Then I tried going back to safari, safari was still and still is my default browers. Anyway, I tried loging into myspace.com, to be exact, and it just sent me to the login page again. I tried login on opera, it worked.
I went to a friends mac and tried login on safari, it worked there. Yet on my mac it still does not work.
So, I deleted my cache, and reset safari, tried again still did not work. Maybe I should restart my computer?
I can get in on opera but that does not make sense.
Also, I noticed my bookmarks are missing, maybe this is after the cache thing. I don't know I am kind of new to macs. But, I did notice that the bookmarks that I had, including the pre-installed mac ones are listed under Safari bookmarks, in opera.app. Is Opera taking over my safari?
Also, this is kind of different. But I have quite a bit of apps on my computer, and I decided to list them into different files under applications. for example opera and safari are under application/internet apps... Could this affect performace, and does everything HAVE TO BE under plain applications, I would not think so, I mean some big programs automatically make a file.
Anyway, help with safari would be awesome! Anyway to reload it or something
Thanks!

Yes, you can reinstall. Directions may be found on this earlier thread. The only change to the instructions will be running the 10.4.7 combo update.
As with all reinstalls, it's a good practice to make a backup of your system beforehand, mitigating any unforeseen problems during the installation.
Post back and let me know how it worked out.
iMac G5 Rev C 20" 2.5gb RAM 250 gb HD/iBook G4 1.33 ghz 1.5gb RAM 40 gb HD   Mac OS X (10.4.7)   LaCie 160gb d2 HD Canon i960 printer

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