Safari won't open. Firefox disappeared, only question mark. Mail doesn't have content. Time Machine won't turn on because sparse bundle is in use. Please help.

I had this issue about a month in a half ago and it was fixed by a local technician. I no longer have access to him and I really need some help. The issues are as follows:
Safari will not open.
Firefox disappeared. No icon, just a question mark in it's place.
When I open mail it shows I have new messages but the content is blank.
Time Machine cannot turn on because sparse bundle is in use.
New files that were made are no longer available. It's almost as if the computer jumped back in time.
The Mac Mini is running Mavericks 10.9.5

I'll assume that you have some way of connecting to this website from the affected machine. If not, ask for other instructions.
Launch the Console application in any of the following ways:
☞ Enter the first few letters of its name into a Spotlight search. Select it in the results (it should be at the top.)
☞ In the Finder, select Go ▹ Utilities from the menu bar, or press the key combination shift-command-U. The application is in the folder that opens.
☞ Open LaunchPad. Click Utilities, then Console in the icon grid.
The title of the Console window should be All Messages. If it isn't, select
          SYSTEM LOG QUERIES ▹ All Messages
from the log list on the left. If you don't see that list, select
          View ▹ Show Log List
from the menu bar at the top of the screen. Click the Clear Display icon in the toolbar. Then try to launch Safari. Select any messages that appear in the Console window. Copy them to the Clipboard by pressing the key combination command-C. Paste into a reply to this message by pressing command-V.
The log contains a vast amount of information, almost all of which is irrelevant to solving any particular problem. When posting a log extract, be selective. A few dozen lines are almost always more than enough.
Please don't indiscriminately dump thousands of lines from the log into this discussion.
Please don't post screenshots of log messages—post the text.
Some private information, such as your name, may appear in the log. Anonymize before posting.

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