Satellite A660 - diagnostic to control HD spin-up/down

I got my Satellite A660 back from the shop. They replaced the HD due to a high Reallocated Sector Count in a S.M.A.R.T. report, and they also replace the mobo because of BSODs and NVIDIA display driver stoppages.
Ever since getting it back, I've been trying to track down the source of a vibration felt at the touch pad (finger actually tingles). When I reported it to Tech Support, they asked me to send it into their depot, which I will do, but I was wondering if there was some kind of testing I could do before their box arrives. Since I don't have another machine, it would sure help to be able to figure out the cause without sending it in (but I don't want to take the computer apart).
However, if nothing can be done about it even if I find out a likely cause, it might speed things up if I provide them information on the things that seem to cause the vibration. In order to possibly avoid sending it in, I asked whether such vibrations were necessarily harmful (I was thinking specifically about long term consequences on the HD). They thought it might. So send it in I will.
The vibration isn't correlated with the fan-on times. At least not the one that whirs every few seconds and causes hot air to come out of the vent. I am assuming that there is only one fan, based on a technician's information. I was wondering if it might be correlated with the spin-up of the HD. Is there a diagnostic app that lets the user control whether the disk spins?

Hi
The notebook switched off automatically because of the high temperature this is kind of notebooks self-protection feature. The notebook powers off to avoid some hardware damage.
> What sits underneath the trackpad?
I assume the CPU and cooling modules can be found there
> The only change that I have done recently is used Soluto to disable some programs at startup (including some Toshiba ones). So I suspect I have disabled some software that somehow controls things in this regard. Is that plausible?
I dont think this could cause such issue the cooling modules are controlled by BIOS.
Even if the Toshiba tools would not be installed, the notebooks temperature should not goes up to an critical level
So I think there must be other reason for this issue.
It could be possible that your cooling modules are not clean and dust prevent the air from circulation it could be also possible that cooling vents are clogged. I recommend cleaning the cooling fans with an compressed air spray
This helps to remove the dust

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