Saving apsand screen organization when updating to 4.1?

_First let me say that I know almost nothing about computers etc so please keep that in mind as I describe what I'm trying to do_. I did a search but was unable to find what I wanted as I didn't really know what to search for.
Is there some way to update to 4.1 and have my apps and the way I have my screens organized stay the same? With all of the older updates to the OS I loose all of my apps and my screens go back to "default" and I have to manually re-download apps and reorganize my screens.
In iTunes, under apps, I only have one game that I deleted from my phone ages ago and none of my new ones are there. I have no idea how that one app got there in the first place and it doesn't go back onto my phone when I installed older OS's.
If this isn't clear, please let me know and I'll try to describe it again.
Thank you in advance.

Well I concluded there must be a problem with that 4.1 upgrade. Ive been trying to upgrade a while now. It seemed to be working, then at the end, my computer crashed. When turning computer back on, I had an error message on itunes, 20001. So I guess I am giving up until Apple gets there act together. I unplugged phone and seems to be working okay now. I still have all my apps.

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