Scanning and Repairing drive C stuck at 100%. - toshiba satellite l70d-a

Hello and thanks in advance:
Laptop model: toshiba satellite l70d-a
Age: 3 months old
Problem: when loading laptop Scanning and Repairing drive C stuck at 100%. Nothing elso than removing the battery. Started suddenly. I have tried to see if there were hd problems but found nothing. Ideas?
Not sure what to do. Can anyone help?

Here i what I have found running glary utilities:
Volume label is TI80145100B.
Glary Utilities 4 is verifying files (stage 1 of 3)...
329216 file records processed.
File verification completed.
1778 large file records processed.
0 bad file records processed.
Glary Utilities 4 is verifying indexes (stage 2 of 3)...
Index entry sessionstore.js in index $I30 of file 59559 is incorrect.
Index entry SESSIO~1.JS in index $I30 of file 59559 is incorrect.
Index entry e6eccf9166454d22f9ad07abdb6da390.png in index $I30 of file 59927 is incorrect.
Index entry E6ECCF~1.PNG in index $I30 of file 59927 is incorrect.
Index entry fb70939c8ecbd4faff2338ee6c5d2529.png in index $I30 of file 59927 is incorrect.
Index entry FB7093~1.PNG in index $I30 of file 59927 is incorrect.
Index entry 44 in index $I30 of file 75218 is incorrect.
Index entry 34 in index $I30 of file 77338 is incorrect.
Index entry 8E in index $I30 of file 77338 is incorrect.
Index entry 55 in index $I30 of file 104698 is incorrect.
Index entry 02 in index $I30 of file 132634 is incorrect.
Index entry FA in index $I30 of file 140243 is incorrect.
426568 index entries processed.
Index verification completed.
Errors found. Glary Utilities 4 cannot continue in read-only mode.
CheckDisk found 1 disk errors as follows:
C:\

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Long post, please be patient... :)
I have a fairly new (purchased 8/2013) Lenovo ThinkPad T431s with Windows 8.1 Pro 64-bit (updated from 8.0 -> 8.1). It has a very tricky error coming basically 8 / 10 boots:
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\\?\Volume{4d337687-0033-42f7-8a8e-b6968b533cb3}\
(This is my C:\ drive where Windows installation resides)
\\?\Volume{e010cf9d-c04d-4c82-b517-3cda1b647fe7}\
*** NO MOUNT POINTS ***
\\?\Volume{f62db2cf-efe4-4b55-a3f7-0e7db991a984}\
*** NO MOUNT POINTS ***
\\?\Volume{33f0062f-0aff-4fd2-8402-1c7911d86897}\
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Volume - \\?\Volume{e010cf9d-c04d-4c82-b517-3cda1b647fe7} is NOT Dirty
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Volume - \\?\Volume{33f0062f-0aff-4fd2-8402-1c7911d86897} is NOT Dirty
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Partition 2 Recovery 1000 MB 129 MB
Partition 3 System 260 MB 1129 MB
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2) Excluded the dirty volume from boot checking with chkntfs /x
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What is causing the error?
3) Why do I have three (3) recovery partitions?

What has happened in the past days:
A) Lenovo on-site-Support changed the motherboard -> had no impact on the error (which I expected).
B) I found
instructions how to manually create USB Flash stick with a booting Custom (OEM) Recovery Image.
C) Booted with USB and performed "Refresh your PC without affecting your files."
D) Windows was refreshed but...
-->>
Still the error remains (Windows scanning and repairing drive \?\Volume{f62db2cf-efe4-4b55-a3f7-0e7db991a984} on each and every boot.
1) Related Error in Event viewer (NTFS):
A corruption was discovered in the file system structure on volume \?\Volume{f62db2cf-efe4-4b55-a3f7-0e7db991a984}.
A file on the volume is no longer reachable from its parent directory. The parent file reference number is 0x2000000000002. The name of the parent directory is "". The parent index attribute is ":$I30:$INDEX_ALLOCATION". The file reference number of the
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Volume \\?\Volume{f62db2cf-efe4-4b55-a3f7-0e7db991a984} (\Device\HarddiskVolume5) needs to be taken offline to perform a Full Chkdsk. Please run "CHKDSK /F" locally via the command line, or run "REPAIR-VOLUME <drive:>" locally or remotely via
PowerShell.
-->>
Now Lenovo support is proposing a full re-install (to be performed by myself) of Windows as this is SW issue.
Summary:
- Refreshing my T431s with OEM Image does not help
- The error remains on \?\Volume{f62db2cf-efe4-4b55-a3f7-0e7db991a984} (\Device\HarddiskVolume5; Lenovo Recovery partition) OR at least Windows thinks so...

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