SCCM 2012 Primary Site Recovery - Packages not working

Question

I recently had to recover my Primary Site due to system crashes with blue screens on a daily basis. I was running ConfigMgr 2012 SP CU 3 and as part of the process I migrated from WS2008 R2 to WS2012 R2.
After many hours of perusing the web, I found the solutions to deal with the common site recovery issues such as SSL certs, and the content validation due to an empty ContentLib folder. I also had the issue with the update source where it listed the old
WSUS 3.2 server and the new one so the Site GUID was also updated.
The issue I am currently experiencing is that packages new or old including software update packages are not working. When using the script by Peter VanWoulde it lists the Deployment State as Error. I have tried redistributing them, valdiating the content,
removing distribution points, adding in new distribution points and even recreating some of the smaller packages to test but nothing is working.
Application deployments are working without issues.
This is the tail end of the WindowsUpdate.log file
2013-11-20 22:03:27:281 1632 a84 COMAPI >>--  RESUMED  -- COMAPI: Search [ClientId = CcmExec]
2013-11-20 22:03:28:098 1632 a84 COMAPI   - Updates found = 176
2013-11-20 22:03:28:098 1632 a84 COMAPI ---------
2013-11-20 22:03:28:098 1632 a84 COMAPI --  END  --  COMAPI: Search [ClientId = CcmExec]
2013-11-20 22:03:28:098 1632 a84 COMAPI -------------
2013-11-20 22:03:32:139 1020 980 Report CWERReporter finishing event handling. (00000000)
This is the UpdatesDeployment.log file
Assignment {FD1118D2-563C-44D4-99DB-0CBE29C5C01A} has total CI = 432 UpdatesDeploymentAgent 21/11/2013 8:31:14 AM 4572 (0x11DC)
Deadline received for assignment ({FD1118D2-563C-44D4-99DB-0CBE29C5C01A}) UpdatesDeploymentAgent 21/11/2013 8:31:14 AM 4572 (0x11DC)
Detection job ({F5229872-7A7E-4692-B709-63989F708AF0}) started for assignment ({FD1118D2-563C-44D4-99DB-0CBE29C5C01A}) UpdatesDeploymentAgent 21/11/2013 8:31:14 AM 4572 (0x11DC)
Progress received for assignment ({FD1118D2-563C-44D4-99DB-0CBE29C5C01A}) UpdatesDeploymentAgent 21/11/2013 8:31:26 AM 4572 (0x11DC)
EnumerateUpdates for action (UpdateActionInstall) - Total actionable updates = 0 UpdatesDeploymentAgent 21/11/2013 8:47:50 AM 3588 (0x0E04)
EnumerateUpdates for action (UpdateActionInstall) - Total actionable updates = 0 UpdatesDeploymentAgent 21/11/2013 8:47:51 AM 3588 (0x0E04)
EnumerateUpdates for action (UpdateActionInstall) - Total actionable updates = 0 UpdatesDeploymentAgent 21/11/2013 8:47:55 AM 3588 (0x0E04)
EnumerateUpdates for action (UpdateActionInstall) - Total actionable updates = 0 UpdatesDeploymentAgent 21/11/2013 8:47:55 AM 2908 (0x0B5C)
At this point I am running out of ideas of where to look.

Answer 1

Hi Xin,
Sorry for not responding earlier but I did recover the site using the guidelines in the following article Backup and Recovery in Configuration Manager,
however there were a few issues. 
I did not have a ContentLib backup so all the content had to be redistributed and validated before that worked. None of my packages new or old would work. I eventually found an article from a forum member who also initiated a Site Reset as part of their
recovery process and had no issues.
So it seems that any packages are still not working and i think I narrowed it down.
For some reason even though my DP and MP are all set for HTTPS, it is trying to access the HTTP path for SMS_DP_SMSPKG$. I am using PKI certs so this is the correct path but it should be HTTPS.
Excerpt from log.
Retrying DoUpdateSourceListAll task SrcUpdateMgr 09/12/2013 2:26:51 PM 3140 (0x0C44)
Product {16A45552-A143-4EE6-8CA4-8D95FB5EEB7E} is installed for user  SrcUpdateMgr 09/12/2013 2:26:51 PM 3140 (0x0C44)
Adding 2 local DPs and 0 remote DPs for product {16A45552-A143-4EE6-8CA4-8D95FB5EEB7E} SrcUpdateMgr 09/12/2013 2:26:51 PM 3140 (0x0C44)
Adding install source C:\Windows\ccmcache\5l\ to source list for product {16A45552-A143-4EE6-8CA4-8D95FB5EEB7E} SrcUpdateMgr 09/12/2013 2:26:51 PM 3140 (0x0C44)
UpdateURLWithTransportSettings(): OLD URL - http://xxxxx.com/sms_dp_smspkg$/p01000ae SrcUpdateMgr 09/12/2013 2:26:51 PM 3140 (0x0C44)
UpdateURLWithTransportSettings(): HTTP requested but client settings prohibit it. SrcUpdateMgr 09/12/2013 2:26:51 PM 3140 (0x0C44)
Failed source list update for product {16A45552-A143-4EE6-8CA4-8D95FB5EEB7E}, error 87d00226 SrcUpdateMgr 09/12/2013 2:26:51 PM 3140 (0x0C44)
DoUpdateSourceListAll task failed, error code 87d00226 SrcUpdateMgr 09/12/2013 2:26:51 PM 3140 (0x0C44)
Source list update task failed, will be retried after 3600 seconds SrcUpdateMgr 09/12/2013 2:26:51 PM 3140 (0x0C44)
MSI update source list task finished successfully SrcUpdateMgr 09/12/2013 2:26:51 PM 3140 (0x0C44)