Screen capture in ProRes422 in timeline shifts after render?

I'm using Final Cut Pro 7 and I need to capture the screen animations from a PowerPoint presentation.  I use iShow U HD to capture the screens at 1920x1080 ProRes.  Then I bring that clip into a 1920x1080 ProRes sequence where it doesn't need rendering.  I need to squeeze the screen capture video into a window, so I resize it in the motion tab and apply some crop too.  Now things need rendered, which is fine.  The timing of all of the clips is perfect when it is unrendered.  When I render the sequence, the timing is off.  It slips the timing of the clips by a bit for each clip.  Unrendered fine, rendered not fine.  I matched the sequence to the video so it would be the same, so it can't be a frame rate problem.  Everything is prores so that should be ok.  Has anyone heard of this before?  Do you have any suggestions?
Thank you for the help,
John

Wish I had an insight, but I don't.
My suggestion is to re-post in the FCS discussion forum…or perhaps Creative Cow…someone may have encountered this with iShow U and can offer advice from first hand experience. This forum doesn't get as much traffic as the others.
Good luck.

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