Search and index functions don't work with merged projects

Until this morning, the search and index functions in my RoboHelp project worked okay; I have one Main project into which I have merged more than three dozen sub-projects. About an hour ago, I created a new sub-project and merged it into the Main project; now, it's as if the topics in my merged projects don't exist.
Any suggestions?
thanks,
Lon

So when you open the merge you see all the content, it is just the search and index not working. This must be merged CHMs as you are talking about a Favourites tab so maybe your other comment is relevant. My understanding of merged CHMs is that you do not want spaces in file names, that could be the problem.
See www.grainge.org for RoboHelp and Authoring tips
@petergrainge

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