Secondary IDE not recognized. Any hope for a fix?

My 6800 GT fried on me on a cold startup.  You can see and smell where it "burnt" (around the capicator near where the molex plug was connected).  I checked everything else, and nothing else seemed to be dammaged, including the molex that was plugged into the VC.  Then after putting in an old VC, the MB posted, but would not boot into windows.  After trying alot of different things, I finally got it to boot and it's running fine right now.
The problem is that I can't get the MB to recoginize anything on the secondary IDE (either of my burners).  I replaced the IDE cable with a brand new one, and I connected one of my burnres to another computer and it worked.  So I can't use any CD-ROM on this MB, which of course is not accepatable.  Also, the primary LAN connection is not found.  The secondary one works fine however.
Does this sound like I'm in need of an RMA?  Or is there something I can try to fix this?

I have never done it because in my country we relate to the dealer/distributor only .
And it's the dealer that eventually use the rma process towards the manufacturers .
But from what i hear others experience,  the turnaround time is between 20-30 days if rma'ed directly to MSI.

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