Security update 2014-002 and boot up time

Hi all,
After installing the Security Update 2014-002, my Mac Pro is taking over 10 minutes to start. I get a grey screen and eventually the Apple logo appears.
I've unplugged everything from the computer and repair permissions already. I've tried to boot in recovery mode, but it never seems to start (waiting on the grey screen for over 20 minutes while my fingers are on the keys isn't a fun time).
Any suggestions would help. Thanks.

These instructions must be carried out as an administrator. If you have only one user account, you are the administrator.
Launch the Console application in any of the following ways:
☞ Enter the first few letters of its name into a Spotlight search. Select it in the results (it should be at the top.)
☞ In the Finder, select Go ▹ Utilities from the menu bar, or press the key combination shift-command-U. The application is in the folder that opens.
☞ Open LaunchPad. Click Utilities, then Console in the icon grid.
Step 1
Make sure the title of the Console window is All Messages. If it isn't, select All Messages from the SYSTEM LOG QUERIES menu on the left. If you don't see that menu, select
View ▹ Show Log List
from the menu bar.
Enter "BOOT_TIME" (without the quotes) in the search box. Note the timestamps of those log messages, which refer to the times when the system was started. Now clear the search box and scroll back in the log to the last boot time when you had the problem. Select the messages logged after the boot, during the time something abnormal was happening. Copy them to the Clipboard by pressing the key combination command-C. Paste into a reply to this message by pressing command-V.
For example, if the problem is a slow startup taking three minutes, post the messages timestamped within three minutes  after the boot time, not before. Please include the BOOT_TIME message at the beginning of the log extract.
If there are runs of repeated messages, post only one example of each. Don’t post many repetitions of the same message.
When posting a log extract, be selective. In most cases, a few dozen lines are more than enough.
Please do not indiscriminately dump thousands of lines from the log into this discussion.
Important: Some private information, such as your name, may appear in the log. Anonymize before posting.
Step 2
Still in Console, look under System Diagnostic Reports for crash or panic logs, and post the entire contents of the most recent one, if any. In the interest of privacy, I suggest you edit out the “Anonymous UUID,” a long string of letters, numbers, and dashes in the header of the report, if present (it may not be.) Please don’t post any other kind of diagnostic report, such as hang logs—they're very long and not helpful.

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                          ErrorCode = 311;
                          ErrorDomain = SUErrorDomain;
                          State = Error;
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    May  3 08:59:17 USERs-MacBook-Air.local Installer[5617]: install:didFailWithError:Error Domain=PKInstallErrorDomain Code=110 "Beim Extrahieren von Dateien aus dem Paket „OSXUpdCombo10.9.3_13D45a.pkg“ ist ein Fehler aufgetreten." UserInfo=0x7f9cc541e860 {NSLocalizedDescription=Beim Extrahieren von Dateien aus dem Paket „OSXUpdCombo10.9.3_13D45a.pkg“ ist ein Fehler aufgetreten., NSFilePath=/var/folders/zz/zyxvpxvq6csfxvn_n0000000000000/C/PKInstallSandboxMan ager/87B152A2-C38A-4DE3-AB2A-886C601C3DC5.activeSandbox/Root, NSURL=file://localhost/Users/USER/Downloads/OSXUpdCombo10.9.3_13D45a.pkg, PKInstallPackageIdentifier=com.apple.pkg.update.os.10.9.3.13D45a.combo, NSUnderlyingError=0x7f9cc5450cb0 "archive verify failed"}

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