Server Intelligence Agent won't start after repair of Business Objects 4.0

I migrated our company's business objects contents and documents from previous BO 3.1 server to new BI 4.0  server using standard BI tools. (That is, using the export wizard in BO 3.1 to create BIAR file and using upgrade management tool to import this biar file to new BI 4.0 server).
After that, everything looks fine, I can log in to launch pad and can see all the folders, reports, etc have been moved over.
But Life Cycle Management stopped working. I guess the reason is, when I created the biar file from source 3.1 server, I basically included everything that may include LCM folder as well, and this folder overwrite the LCM folder in BI 4.0 server. In order to fix this issue, I did "repair" of BI platform. After this, the Server Intelligen Agent won't start.
Tried to log on to cmc, got error message 
"Error: Server SERVERTest:6400 not found or server may be down (FWM 01003) null"
Tried to start the Server Intelligence Agent from "services", got message:"windows could not start the server intelligence agent (servertest) from local computer..." Checked the event log, no much useful information.
Can anyone please give me some ideas? what might have caused this issue? where should I look to? I hope we don't have to go through uninstall/reinstall.
thanks.

Hi,
check the Task Manager if you have running the processes running "SIA.exe" ans "cms.exe"
Regards
-Seb.

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