Server mail does not delete mail queue

mail server does not delete mail queue.

Apparently, Mail sometimes fails to remove messages from the server when Remove copy from server is set to Right away -- don’t know why.
I can only guess Mail sometimes has problems communicating with the server, and precisely because the setting is Right away, never tries again. I’d try changing the setting to After one day or When moved from Inbox, and see whether that makes a difference.
Also, go to Apple Menu > System Preferences > Network, choose Network Port Configurations from the Show popup menu, and make sure that the configuration used to connect to Internet appears at the top of the list.
Have you checked whether Thunderbird does remove the messages from that server?
BTW, woodie is wrong. It’s true that Gmail ignores any requests to delete messages from the server made by a POP client, but it doesn’t let the same messages to be downloaded more than once via POP either. Gmail just doesn’t work like a normal POP server would.

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