Server upgrade newbie questions

Hi Everyone!
So I work for a small-ish nonprofit and as I am researching information on what my to-be system is, I am running into a lot of questions.  I have tried google-ing them with not much success.  So I am hoping that all of your expertise might help
drive me in the right direction.
Mind you, I have only been with our organization for about 2.5 weeks, and it is all over the place.
Right now, we have approximately 90 PCs, both desktops and laptops, distributed around 12 counties.  ~50% of these PCs are utilized by our staff, while the others are used by the general public for internet and document editing.  We also have ~
30 smartphones that I need to manage at some level.  I would also mention that we have PCs with XP, Win7, Vista, and Windows 8 (these PCs were all purchased by different people at different times, or donated to our organization).  We are currently
transitioning to google mail, so I was also planning to use the google apps extension to integrate with AD.  Right now, our local "headquarters" is where our servers are located, and the person who set our server up had installed SBS 2011.  There
has been a domain setup, and all but one of the local PCs were added to it (minus the Win8 machine due to SBS limitations).
Because I am new to this, and the situation is a bit complicated (as you can see from above), I was really impressed with Server 2012 R2 because of some of the capabilities of it.  The primary functions of the server are to provide a way for me to manage
all of the users (even the distributed ones), the PCs, and the devices (phones).  The way that I understood this, is that DirectAccess could allow me to provide help desk support (I am the only IT person in our organization so I am wearing multiple hats),
removing the programs that were utilized by my predecessors (i.e. logmein).  I am hoping that with them all added to the domain, I would also be able to ensure that they were being updated properly on a schedule.  We also have multiple different
anti-virus softwares that have been deployed at different times on different OSs.  I was hoping to be able to standardize this and be able to manage that as well.
So....the questions....
Because we are a nonprofit, we are members of techsoup and can get the software cheap enough, but I don't really understand the licensing, particularly the Remote desktop services CALs.  How does this service differ from what I currently understand
as RDC.  Do I need to get one of these CALs to be able to provide remote support to users/PCs?
How do I properly assess the software?  Because I have never performed a server upgrade, or really messed with Server other than seeing the SBS console and being able to muddle through it easy enough, an I going to have issues when upgrading from SBS
2011 (backing up and redeployment)?  The current Hardware is going to be on the low end of the min. sys. requirements.  Is this going to be a huge issue considering the size of our organization? 
Am I even on the right track?  
My hope is to create a semi one time investment (for at least the next few years) so that the focus can be turned towards upgrading field equipment.  
I would appreciate everyones thoughts and help (as I mentioned in the title, I am a newbie at server stuff).
Thanks in advance!

"Because we are a nonprofit, we are members of techsoup and can get the software cheap enough, but I don't really understand the licensing, particularly the Remote desktop services CALs.  How does this service differ from what I currently understand
as RDC.  Do I need to get one of these CALs to be able to provide remote support to users/PCs?"
Your absolute best source of licensing information and clarification is to speak with a trained Microsoft licensing specialist.  You can find one by starting your search at
www.microsoft.com/licensing.
Are all these devices owned by your organization?  If so, dump XP as quickly as possible.  You also might want to check into Office 365 instead of google apps, unless you like the fact that google reads everything you do.  The combination
of Office 365 and Windows Intune might seem like a lot of money up front, but when you consider the significant amount of management time that is simply eliminated by them, they can be quite cost-effective.
It's pretty hard to 'assess' the software without any knowledge of applications needed, usage patterns, vendors, etc.  If you do not feel comfortable performing the function yourself, find a reputable local consultant to come in and assist.
. : | : . : | : . tim

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    02:49:36:CheckPrerequisites:                 ProductType was not a match.  Looking for: LanmanNT Found: ServerNT
    02:49:36:CheckPrerequisites:         Logic Type:or    Win2k8R2Sp1DCCheck-Err: 2
    02:49:36:CheckPrerequisites:
    02:49:36:CheckPrerequisites:                 The value 6.1.7601.65536 was not within the range 6.2.0 to 9.9.9999.
    02:49:36:CheckPrerequisites:         Logic Type:or    WinSrvrVNextCheck-Err: 2
    02:49:36:CheckPrerequisites:
    02:49:36:CheckPrerequisites:                 ProductType was not a match.  Looking for: LanmanNT Found: ServerNT
    02:49:36:CheckPrerequisites:         Logic Type:or    WinSrvrVNextDCCheck-Err: 2
    02:49:36:
    02:49:36:CheckPrerequisites:     Windows Service Pack check: Passed
    02:49:36:
    02:49:36:**************************************************
    02:49:36:
    02:49:36:**************************************************
    02:49:36:CheckPrerequisites: Checking Microsoft Report Viewer Redistributable check prereq.
    02:49:36:Entered RequiredReportViewer
    02:49:36:CheckPrerequisites:         Logic Type:and    RptVwrCheck-err: 0
    02:49:36:
    02:49:36:CheckPrerequisites:     Microsoft Report Viewer Redistributable check: Passed
    02:49:36:
    02:49:36:**************************************************
    02:49:36:
    02:49:36:**************************************************
    02:49:36:CheckPrerequisites: Checking PowerShell 2.0 check prereq.
    02:49:36:CheckPrerequisites:         Logic Type:and    PowerShell2Check-err: 0
    02:49:36:CheckPrerequisites:         Logic Type:or    PowerShell2Check32-err: 0
    02:49:36:
    02:49:36:CheckPrerequisites:     PowerShell 2.0 check: Passed
    02:49:36:
    02:49:36:**************************************************
    02:49:36:
    02:49:36:**************************************************
    02:49:36:CheckPrerequisites: Checking ADO.NET Data Services Update check prereq.
    02:49:36:Loading System.Data.Services.Client, Version=3.5.0.0, Culture=neutral, PublicKeyToken=b77a5c561934e089
    02:49:36:Found version 3.5.30729.5420
    02:49:36:CheckPrerequisites:         Logic Type:and    ADODotNetDataServicesHotfix-err: 0
    02:49:36:
    02:49:36:CheckPrerequisites:     ADO.NET Data Services Update check: Passed
    02:49:36:
    02:49:36:**************************************************
    02:49:36:
    02:49:36:**************************************************
    02:49:36:CheckPrerequisites: Checking Microsoft SQL Server 2008 Native Client check prereq.
    02:49:36:CheckPrerequisites:         Logic Type:and    SQLNCLI10-err: 0
    02:49:36:
    02:49:36:CheckPrerequisites:     Microsoft SQL Server 2008 Native Client check: Passed
    02:49:36:
    02:49:36:**************************************************
    02:49:37:CheckPrerequisites: Return Value 0
    02:49:39:Doing Pre-Upgrade checks...
    02:49:39:Validating database ServiceManagerNew on SQL Server TESTSER
    02:49:39:Validating SQL Instance TESTSER
    02:49:39:SQL Server: TESTSER
    02:49:39:SQL Server version: 10.50.1600.1
    02:49:39:Full text search installed: True
    02:49:39:Checking if '\administrator' is Sysadmin Or (SecurityAdmin And DbCreator) on SQL Instance TESTSER
    02:49:39:Stopping Service OMSDK on server
    02:49:39:Starting Service OMSDK on server
    02:49:41:Stopping Service OMCFG on server
    02:49:44:Starting Service OMCFG on server
    02:49:47:Validating Path C:\Program Files\Microsoft System Center\Service Manager 2010\
    02:49:47:Checking for available free disck space
    02:49:47:Checking directory write access
    02:49:47:*** Pre-Upgrade checks passed ***
    02:49:47:QuickFixEngineeringHandler: Unable to LoadQuickFixEngineeringFile.
    02:49:47:SetProgressScreen: StartMinorStep.
    02:49:47:statusUpdate: Resetting progress bar.
    02:49:47:ProcessInstalls: Install Item System Center Service Manager Install has a Preprocessing delegate of SystemCenterServiceManagerPreinstallProcessor.  Launching it now.
    02:49:47:SetProgressScreen: Init MSI Install progress.
    02:49:47:statusUpdate: Resetting progress bar.
    02:49:47:LaunchMsi: Msi mutex is not in use.
    02:49:47:LaunchMsi: MSI to launch is: c:\SCSM2012\amd64\Setup\Server\SM.msi.
    02:49:47:LaunchMsi: Turning off the internal UI for c:\SCSM2012\amd64\Setup\Server\SM.msi.
    02:49:47:LaunchMSI:  Enable logging for the MSI at C:\Users\administrator.\AppData\Local\Temp\2\\SCSMInstall02.log.
    02:49:47:LaunchMsi: MSI c:\SCSM2012\amd64\Setup\Server\SM.msi is not in silent mode.  Setting the external UI.
    02:49:47:LaunchMsi: Launching c:\SCSM2012\amd64\Setup\Server\SM.msi
    02:49:52:statusUpdate: Resetting progress bar for MSI: MaxValue 58857
    02:50:09:statusUpdate: Resetting progress bar for MSI: MaxValue 345710070
    02:50:09:Install Progress - (ProcessComponents) Updating component registration
    02:50:09:statusUpdate: Resetting progress bar for MSI: MaxValue 345710070
    02:50:10:Install Progress - (StopServices) Stopping services
    02:50:16:Install Progress - (_StopNamedServices_HealthService.80B659D9_F758_4E7D_B4FA_E53FC737DCC9) Stopping Health services
    02:50:17:Install Progress - (RemoveODBC) Removing ODBC components
    02:50:17:Install Progress - (RemoveFiles) Removing files
    02:50:17:Install Progress - (CreateFolders) Creating folders
    02:50:17:Install Progress - (InstallFiles) Copying new files
    02:50:30:Install Progress - (_CreateDatabase) Creating Database
    02:50:30:Install Progress - (_ExecuteSqlScripts) Configuring Database
    02:52:07:Install Progress - (ExecuteSqlStrings) Executing SQL Strings
    02:52:07:Install Progress - (CreateShortcuts) Creating shortcuts
    02:52:07:Install Progress - (WriteRegistryValues) Writing system registry values
    02:52:08:Install Progress - (_InstallServerPerfCounters.D2179E31_E456_401A_A820_CEBB135E3429) Installing Server Performance Counters
    02:52:12:Install Progress - (WriteEnvironmentStrings) Updating environment strings
    02:52:12:Install Progress - (_Rollback_UninstallBIDMOF.68918168_3885_4F75_BBF8_0CC84213F8D1) Rolling back BID MOF Installation
    02:52:23:Install Progress - (GenerateScript) Generating script operations for action:
    02:52:24:Install Progress - (_MPProcessorDeferred) Importing Management Packs
    02:52:25:Install Progress - (_ExecuteSqlScripts) Configuring Database
    02:52:26:Install Progress - (RegisterUser) Registering user
    02:52:26:Install Progress - (RegisterProduct) Registering product
    02:52:26:Install Progress - (PublishComponents) Publishing Qualified Components
    02:52:26:Install Progress - (MsiPublishAssemblies) Publishing assembly information
    02:52:26:Install Progress - (_ConfigureConfigService.D2179E31_E456_401A_A820_CEBB135E3429) Configure Config Service
    02:52:26:Install Progress - (_CreateInstanceQualityRelationship) Creating Default Instances, Qualities And There Relationships
    02:52:26:Install Progress - (PublishFeatures) Publishing product features
    02:52:26:Install Progress - (_StartNamedServices_HealthService.80B659D9_F758_4E7D_B4FA_E53FC737DCC9) Restarting Health Service
    02:52:26:Install Progress - (PublishProduct) Publishing product information
    02:52:26:statusUpdate: Resetting progress bar for MSI: MaxValue 177276452
    02:52:26:statusUpdate: Resetting progress bar for MSI: MaxValue 177276452
    02:57:32:statusUpdate: Resetting progress bar for MSI: MaxValue 177276452
    02:57:44:An error occurred while executing a custom action:_RegisterExtensionsDeferred
    Upgrade failed after making permanent changes to this management server. A disaster recovery procedure will be necessary to rebuild this machine before attempting upgrade again. Consult the User Guide to determine which action to take next.
    02:57:44:Install Progress - (Rollback) Rolling back action:
    02:57:44:statusUpdate: Resetting progress bar for MSI: MaxValue 177276452
    02:57:44:statusUpdate: Resetting progress bar for MSI: MaxValue 3
    02:57:44:Install Progress - (Rollback) Rolling back action:
    02:57:44:statusUpdate: Resetting progress bar for MSI: MaxValue 10525
    02:58:43:MsiInstallProduct finished for msi c:\SCSM2012\amd64\Setup\Server\SM.msi.
    02:58:43:LaunchMSI: Setting rollback to true
    02:58:43:LaunchMSI: MSI c:\SCSM2012\amd64\Setup\Server\SM.msi returned error 1603:Fatal error during installation
    02:58:43:ProcessInstalls: Install Item System Center Service Manager Install failed to install.  We did not launch the post process delegate.
    02:58:43:SetProgressScreen: FinishMinorStep.
    regards Sundaresan.C

    Jeremiah,
    We ran into this as well. One of two options:
    1.) Just run a repair on the SQL Server installation
    2.) Repair the WMI settings on the SQL Server as descibed here:
    http://social.technet.microsoft.com/Forums/en-US/systemcenterservicemanager/thread/2a91d03e-a685-495e-89ac-a591ec5871f6/
    bb

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