Setting up new MBP with SSD and optical drive and restoring from Time Capsule

Hi Everyone-
Sorry if this has been addressed before, but I couldn't find a specific answer by searching.  My last macbook was stolen, but luckily I had everything backed up in my Time Capsule.  I just ordered my new Macbook Pro (13"), 16GB Ram, and a 240GB SSD.  I plan to install everything next week.  My plan is to keep all of my apps and working files on my SSD and use my 2nd hard drive for data storage and possibly my itunes library.  My question is- when setting all of this up, what would be the best way to go about doing this.
1.) Restoring my time machine backup to the original hard drive, move it to the optical drive bay, and then copy over the files that I want on the SSD (after installing the operating system) and delete them off of the origan HD.
2.) Restore my backup to the SSD (once it's installed) and then move files over to the formated original harddrive in the optical bay.  My problem is that there may not be enough room on the 240GB SSD.
3.) Is there a way to do a slective restore through TM and move where I want to keep them?  I think this would be the easiest.
4.) Other way that I haven't mentioned
Thanks for any help with this question. 

I used setup assistant last time when I changed from a 2009 mini to a 2010 mini. It caused some file permission errors that still persist today with iPhoto. I have 2 accounts on my mini, 1 for my wife and 1 for myself, but I store all our photos and videos on the shared folder in order to avoid duplication. But when she imports pictures from her profile and I try to view them full screen, I'm unable to. I have to relaunch iPhoto and repair file permissions if I want to view them properly. I was hoping to avoid this happening again.

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