Settings/icons/more not persisting through restart

I just recently installed ML and on every restart, my dock goes back to what it was on Lion and all my settings revert to what they were on lion. Nothing I change stays through a restart.
More examples after restart:
ical and address book return as ? icons in the dock, even though I've removed them and replaced them with Calendar and Contacts
Brand new adds to the dock, like messages, leave and I have to re-add them
Firefox, which I've set as my default browser, returns to non-default status
My screen starts in inverted-colors mode for no apparent reason, forcing me to hit Cmd+Option+Ctrl+8 to switch to normal
Any help?

This is a long shot but it worked for me once when my stuff was messed up at start.  I was told to do this by an Apple phone support person and it worked.  And it may have nothing to do with your problem, but . . .
You need another admin user on the mac.  Restart and log into the other user.  Then restart back to your user.  I did that and all was fixed. I asked how, and was just told that a mac does a lot of self healing.  Your mileage may vary, and this was before Mountain Lion.

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