Shaky video during playback

I have some HD video I shot with my Cannon T1I that I converted to AIC files using MPEG Streamclip. After doing some editing in FCE, I used quicktime to view the files. During playback of the footage I noticed the footage was shaking quit bad, which made it hard to view. I've done this process before without the shaking, so I'm not sure what happened.
I converted the files to AIC files and used 29.97 fps.
Any help would be appreciated!
Thanks,

I wonder if this the case as I had the resolution qualities mazes out. I'll watch them again in full screen mode and my tv to compare.
I do have perian installed. Not sure if I've updated it since snow leoppard.
Thanks guys!!

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