Shared Excel Files Being Deleted by DFSR

Hi
I've got a problem with our DFS setup. For several years we've been replicating from a live 2003 server to a 2008 R2 server for backup purposes. Users can only access the live server. The 2008 folders were not shared and never edited.
We needed to replace the 2003 server so I made the 2008 live and shared the folders and pointed DFS to that as the live target. After deleting the old replication group, removing the 2003 server completely and deleting the old DFSR folder from the Sysvol
of the 2008 server, I then built a 2012 R2 server to become the new live server. I setup replication to the new 2012 server using data collection from the 2008 to get a copy of the data across ready to switch.
Again, users can only access the 2008 server the 2012 is not shared. Yet after initial replication completed I started to get 4412 events stating files had been changed on multiple servers. I don't understand how this is possible when server is not accessible.
Then files began to disappear.
All the files logged as in conflict are Excel files that are being accessed by multiple users on the 2008 server. Sometimes it's OK. Sometimes the conflict removes the file from both servers and places it in the Conflict and Deleted. I am replicating the
lock files even though only one copy of the data is available to users.
Can anyone shed any light on why this is happening?
Cheers
Mart

Apologies didn't explain it very clearly. The 2003 server is removed. So the DFS is pointed to a single folder target, the 2008 server.
I set up the 2012 in a replication group to collect data from the 2008 server. Eventually I intend to point the folder target to the 2012 and only the 2012 but after initial replication I started to get the problem.
Currently, even though the DFS has only one folder target on the 2008 server, I'm getting 4412 in event viewer on both servers telling me files have changed on more than one server. I don't understand how that's happening as the copy on the 2008
server is the only one that is shared and targeted for users to access. Also there are only these two servers in the replication group.
Hope that is clearer.

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