SharePoint Foundation Web Application service "missing"

Hi all,
I've got an unusual situation. I was getting an "object reference not set to an instance of an object" error when trying to create a web application which was a little concerning.
Although I've not got to the bottom of that yet I've discovered that the SharePoint Foundation Web Application service is "missing" when I go to the list of Services on Server in Central Admin. It's only a small farm (1 app and 1 web server) with
the service running on the web server. 
It must actually be running because the existing SharePoint sites are running, but obviously something's not right.
Has anyone ever seen this happen before?
Thanks.

Thank you for the replies
I've run Install-SPService but that's not made any difference.
When I run the SharePoint Products Configuration Wizard (GUI), on the first screen (Modify server farm settings) it's showing the
correct database server and configuration database name and "Do not disconnect from this server farm" is selected by default.
On the next screen (Configure SharePoint Central Administration Web Application) it looks like I'm configuring a new because it wants me to specify a port for central admin. If I specify the existing central admin port then I get "The port specified
has already been chosen". If I don't specify the port then it appears that if I continue Central Admin will be re-provisioned on a new port. 
"False" is returned for the command  (get-spserver $env:computername).NeedsUpgrade 
Could running psconfig from the command line fix this? If there's an issue I don't want to make things worse (although we are running in a VMware environment so I can snapshot the servers).
Thanks.

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