Shot with film, can't get rid of slight wobble

I'm a student and just got back a digital copy of some film (yes, actual film!) that I shot for my final assignment. My movie is based on the idea of a guy becoming trapped in a hallway when it suddenly extends into infinity on both ends. I shot everything on a tripod in order to easily duplicate the hallway into infinity. The technique involves duplicating the clip and minimizing it over itself, then lining up the walls, floor, and ceiling. This makes the hallway look like it goes on much further than it actually does.
The problem is that by shooting on film, I partially ruined the effect. There is an ever-so-slight wobble to the video which I think is due to the imprecise way the film was run through the camera. Every frame is in a slightly different place and so the video is not completely static. It's not really noticeable until I put the hallway extension in there. Then, the extension part sticks out like a sore thumb, sitting still while the rest of the video wobbles.
My question is if there's a way to stabilize the slight wobble. I tried using the image stabilization feature in FCPX but it did nothing to help. I just want the video to ever-so-slightly be stabilized to be a truly static shot. Any suggestions?

You need to go the other way round and apply the wobble to the extension.
How? It's called Tracking -you follow the movement in the original by locking onto one or more distinctive pixels, usually brighter ones. The data set that you derive from that set of images is then applied to the other.
Motion has the tools to do this. http://documentation.apple.com/search/#q=tracking

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