Slow BR build with previously transcoded media (CS6 Mac)

Very simple BR: 1 menu with 1 button and 1 timeline. All media was transoded using AME.
Build starts at what seems to be a normal pace, then during the "Building Movies" stage it slows down to a crawl with 24 seconds left. Screenshot attached
Some THINGS:
1) Encore still seems to be working, at least it's churning away on one of my Mac Pro cores in Activity Monitor
2) It appears to be working on the file BDMV/DB/BDMV/STREAM/00001.m2ts as that file is slowly growing larger
3) The movie in the timeline is 4.1 GB, and there already is BDMV/DB/BDMV/STREAM/00003.m2ts which is 4.1 GB.
4) In the build progress, it already previously built a 4.1 GB movie
5) I think it is building the timeline a second time, this time transcoding the already transcoded file
Any thoughts on this nonsense?
Mac Pro 5,1
OS X 10.7.5
CS6 with all current updates

Some more info: the menu is the problem here. The menu background is a 2.5 second movie tht is just a 1 sec fade up on a title card. There is one button, which is an 8x8 graphic that sits in the top left corner (i.e., "invisible" button). This button links to the 1 timeline, which has an end action of returning to the menu. There is also a fade out movie that is the button transition. When I remove the fade in menu background, the build will complete, so this seems to be the problem. Screenshots of relevant tabs attached.

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