Smooth .mov - jerky .mp4-

Ok, this one puzzles me.
I have this nice and heavy 900MB lossless mov file.
It’s been exported from Screenflow at the best possible quality (lossless, 1280x720, 48kHz audio…)
It plays well on this mac.
Except on this machine I don’t have the sources anymore, so i’ll have to work with that.
I need to turn this into an mp4/h264 so it can be broadcasted (end file goes to a mooc)
Interesting thing i that, where the .mov file displays a really smooth screen recording, any attempt and settings tweaks I’ve made so far keep getting me jerky results. On my side, weight of the file isn’t an issue, so I put the levels up, reduced the in-between frames value, upped the bitrate.
No luck so far.
Would anyone be interested into checking this file and tell me if something can be done, and what would be the required settings to have an .mp4 as smooth as the original .mov ?
120MB zip, inside is a 400MB .mov file (removed, this one was exporting nicely…)
2A-FolioOverlays-Multimedia.mov.zip - Google Drive

Ok, some news on my side.
I checked the project file i sent you to discover that this particular project exported "smoothly enough". Then back to the first one I mentionned (900MB file) was still jerky. That's where I tried importing in premiere to reexport again, and read this in the project manager :
It seems I have an export problem… from Screenflow, which makes it hard to get a smooth export/conversion/transcoding, and only on the 0, 2A, 2B files…
So i'll share you the 2A-FolioOverlays-Multimedia.mov.zip - Google Drive let me know if you do better than what I got

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