SMPTE offset not correct

I am using Logic Pro 9 to score film.  The film begins at 00:59:49.00.  I opened Project Settings, set the frame rate to the correct 29.97.  Select the SMTPE offset option and set measure 1 to 00:59:49.00
I set the transport display to show the SMPTE offset below but when I hit play and then hit pause, the SMPTE displayed in the transport is slightly off (by a few frames it seems) from the burnt time stamp on the video. 
What's wrong??? Is the video incorrectly stamped or is there a lead in that needs to be accounted for?  Someone help pleaseeeeeeeeeee

It is not consistent in how many frames it is behind.  Sometimes SMPTE offset will display 01:00:08:25 while the timestamp on the video reads 01:00:08:18...sometimes 3 frames sometimes 12.
I unchecked the pre-roll and it's still off.
No plugins, just the movie loaded and one software instrument track.  Tempo is set to 120...all default settings
I/O Buffer set to 1012, tried others and it didn't make a difference.
Plugin Latency compensation is set to ALL

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