[solved]Desktop permission settings lost while upgrading.

i've been waiting a while for the latest gtk3, and thus all the applications that depend on it, to move out of the testing stage. when they did last night, however, upgrading somehow removed all of my standard permissions. i can no longer mount external or other internal drives, manage networking, shutdown/hibernate/suspend, and lots of applications complain and crash with permission errors. here's my pacman log for exactly what was installed/replaced:
[2012-10-30 19:05] Running 'pacman-color -Syu'
[2012-10-30 19:05] synchronizing package lists
[2012-10-30 19:05] starting full system upgrade
[2012-10-30 19:14] removed libwebkit3 (1.8.3-1)
[2012-10-30 19:14] upgraded glib2 (2.32.4-1 -> 2.34.1-1)
[2012-10-30 19:14] upgraded atk (2.4.0-1 -> 2.6.0-1)
[2012-10-30 19:14] installed gstreamer (1.0.2-1)
[2012-10-30 19:14] installed gst-plugins-base-libs (1.0.2-1)
[2012-10-30 19:14] installed harfbuzz (0.9.5-1)
[2012-10-30 19:14] upgraded pango (1.30.1-1 -> 1.32.1-1)
[2012-10-30 19:14] installed gst-plugins-base (1.0.2-1)
[2012-10-30 19:14] upgraded gsettings-desktop-schemas (3.4.2-1 -> 3.6.0-1)
[2012-10-30 19:14] upgraded glib-networking (2.32.3-1 -> 2.34.0-1)
[2012-10-30 19:14] upgraded libsoup (2.38.1-1 -> 2.40.1-1)
[2012-10-30 19:14] upgraded libgnome-keyring (3.4.1-1 -> 3.6.0-1)
[2012-10-30 19:14] upgraded libsoup-gnome (2.38.1-1 -> 2.40.1-1)
[2012-10-30 19:14] installed chromaprint (0.7-1)
[2012-10-30 19:14] installed celt (0.11.1-4)
[2012-10-30 19:14] installed spandsp (0.0.6pre21-1)
[2012-10-30 19:14] installed gst-plugins-bad (1.0.2-1)
[2012-10-30 19:14] upgraded banshee (2.4.1-1 -> 2.6.0-1)
[2012-10-30 19:14] upgraded polkit (0.105-1 -> 0.107-4)
[2012-10-30 19:14] upgraded colord (0.1.21-2 -> 0.1.24-1)
[2012-10-30 19:14] installed at-spi2-core (2.6.1-1)
[2012-10-30 19:14] upgraded dconf (0.12.1-2 -> 0.14.0-1)
[2012-10-30 19:14] installed at-spi2-atk (2.6.1-1)
[2012-10-30 19:14] upgraded gtk3 (3.4.4-1 -> 3.6.1-1)
[2012-10-30 19:14] upgraded gdk-pixbuf2 (2.26.3-1 -> 2.26.4-1)
[2012-10-30 19:14] installed gst-plugins-good (1.0.2-1)
[2012-10-30 19:14] upgraded json-glib (0.14.2-1 -> 0.15.2-1)
[2012-10-30 19:14] upgraded clutter (1.10.6-1 -> 1.12.2-1)
[2012-10-30 19:14] upgraded clutter-gst (1.6.0-1 -> 1.9.92-1)
[2012-10-30 19:14] upgraded clutter-gtk (1.2.0-1 -> 1.4.0-1)
[2012-10-30 19:14] upgraded libgee (0.6.5-1 -> 0.6.6-1)
[2012-10-30 19:14] upgraded gnome-video-effects (0.4.0-1 -> 0.4.0-2)
[2012-10-30 19:14] upgraded libcroco (0.6.5-1 -> 0.6.8-1)
[2012-10-30 19:14] upgraded librsvg (2.36.3-1 -> 2.36.4-1)
[2012-10-30 19:14] upgraded gnome-desktop (1:3.4.2-1 -> 1:3.6.1-1)
[2012-10-30 19:14] upgraded cheese (3.4.2-1 -> 3.6.1-1)
[2012-10-30 19:14] upgraded e2fsprogs (1.42.5-1 -> 1.42.6-1)
[2012-10-30 19:14] upgraded gnome-icon-theme-symbolic (3.4.0-1 -> 3.6.0-1)
[2012-10-30 19:14] upgraded gnome-icon-theme (3.4.0-1 -> 3.6.0-1)
[2012-10-30 19:14] upgraded evince (3.4.0-1 -> 3.6.1-1)
[2012-10-30 19:14] upgraded glade (3.12.1-1 -> 3.14.1-1)
[2012-10-30 19:14] upgraded glibmm (2.32.1-1 -> 2.34.0-1)
[2012-10-30 19:14] upgraded udisks2 (1.94.0-2 -> 2.0.0-1)
[2012-10-30 19:14] installed libsecret (0.10-1)
[2012-10-30 19:14] upgraded gvfs (1.12.3-3 -> 1.14.0-1)
[2012-10-30 19:14] upgraded gvfs-obexftp (1.12.3-3 -> 1.14.0-1)
[2012-10-30 19:14] upgraded gnome-bluetooth (3.4.2-1 -> 3.6.0-2)
[2012-10-30 19:14] upgraded gnome-common (3.4.0.1-2 -> 3.6.0-1)
[2012-10-30 19:14] upgraded gobject-introspection (1.32.1-2 -> 1.34.1.1-1)
[2012-10-30 19:14] upgraded pygobject-devel (3.2.2-2 -> 3.4.1.1-1)
[2012-10-30 19:14] upgraded python2-gobject (3.2.2-2 -> 3.4.1.1-1)
[2012-10-30 19:14] upgraded gnome-menus (3.4.2-1 -> 3.6.0-1)
[2012-10-30 19:14] installed webkitgtk3 (1.10.1-1)
[2012-10-30 19:14] upgraded rest (0.7.12-1 -> 0.7.90-1)
[2012-10-30 19:14] upgraded gnome-online-accounts (3.4.2-1 -> 3.6.0-1)
[2012-10-30 19:14] installed ibus (1.4.99.20121006-1)
[2012-10-30 19:14] upgraded gnome-settings-daemon (3.4.2-1 -> 3.6.1-2)
[2012-10-30 19:14] installed iptables (1.4.16.2-1)
[2012-10-30 19:14] upgraded iproute2 (3.5.1-1 -> 3.6.0-2)
[2012-10-30 19:14] installed dhclient (4.2.4.1-3)
[2012-10-30 19:14] upgraded networkmanager (0.9.6.0-2 -> 0.9.6.4-1)
[2012-10-30 19:14] upgraded network-manager-applet (0.9.6.2-1 -> 0.9.6.4-1)
[2012-10-30 19:14] installed libpwquality (1.2.0-1)
[2012-10-30 19:14] warning: directory permissions differ on usr/share/polkit-1/rules.d/
filesystem: 700 package: 755
[2012-10-30 19:14] upgraded gnome-control-center (3.4.2-1 -> 3.6.2-1)
[2012-10-30 19:14] upgraded gnome-disk-utility (3.4.1-1 -> 3.6.1-1)
[2012-10-30 19:14] upgraded gtk-engine-unico (1.0.2-1 -> 1.0.2-3)
[2012-10-30 19:14] upgraded gtkmm3 (3.4.1-1 -> 3.6.0-1)
[2012-10-30 19:14] upgraded gvfs-afc (1.12.3-3 -> 1.14.0-1)
[2012-10-30 19:14] upgraded gvfs-afp (1.12.3-3 -> 1.14.0-1)
[2012-10-30 19:14] upgraded gvfs-gphoto2 (1.12.3-3 -> 1.14.0-1)
[2012-10-30 19:14] upgraded gvfs-smb (1.12.3-3 -> 1.14.0-1)
[2012-10-30 19:14] upgraded libxklavier (5.2.1-2 -> 5.3-1)
[2012-10-30 19:14] upgraded libgnomekbd (3.4.0.2-1 -> 3.6.0-1)
[2012-10-30 19:14] upgraded libpeas (1.4.0-2 -> 1.6.1-1)
[2012-10-30 19:14] upgraded vte-common (0.32.2-1 -> 0.34.1-1)
[2012-10-30 19:14] upgraded xorg-xinit (1.3.2-1 -> 1.3.2-3)
[2012-10-30 19:14] upgraded xterm (285-1 -> 286-1)
i've been using polkit, udisks, udisks2, etcetera for things (although it's been a while since this machine was set up, so i've forgotten some things.) and my desktop is MATE 1.4
where should i start looking first, and what other useful information can i provide?
Last edited by shmibs (2012-10-31 18:33:22)

I guess have a similar problem. NetworkManager still runs but when I try to connect to a new network, it complains: "Failed to add/activate" connection (32) Insufficient privileges.
Also, I cannot enable/disable wireless from nm-applet
Yes, I read the news and I believe my system is boot using systemd.
I don't have it in rc.conf (although I do have some DAEMONS remain in rc.conf, like dbus) I start nm by 
sudo systemctl start networkmanager.service
after login. Do I need to remove all the DAEMONS from rc.d, in order to make things work? Any help?
Last edited by pingpong (2012-10-31 17:32:31)

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