[SOLVED] Mysql doesn't start, Can't change dir to '/var/lib/mysql/'

My mysql install was working fine but now it doesn't start
$ mysqld --verbose
121202 22:41:34 [Warning] Can't create test file /var/lib/mysql/home.lower-test
121202 22:41:34 [Warning] Can't create test file /var/lib/mysql/home.lower-test
mysqld: Can't change dir to '/var/lib/mysql/' (Errcode: 13)
121202 22:41:34 [ERROR] Aborting
121202 22:41:34 [Note] mysqld: Shutdown complete
I checked using mysql_safe & it seems to be a permission issue
$ mysqld_safe --user=mysql
121202 22:45:34 mysqld_safe Logging to '/var/lib/mysql/home.err'.
121202 22:45:35 mysqld_safe Starting mysqld daemon with databases from /var/lib/mysql
/usr/bin/mysqld_safe: line 107: /var/lib/mysql/home.err: Permission denied
rm: cannot remove ‘/var/run/mysqld/mysqld.sock’: Permission denied
rm: cannot remove ‘/var/lib/mysql/home.pid’: Permission denied
/usr/bin/mysqld_safe: line 144: /var/lib/mysql/home.err: Permission denied
121202 22:45:35 mysqld_safe mysqld from pid file /var/lib/mysql/home.pid ended
/usr/bin/mysqld_safe: line 107: /var/lib/mysql/home.err: Permission denied
But the thing is /var/lib/mysql is already owned by mysql,
$ ls -la /var/lib/ | grep mysql
drwxrw-r-- 19 mysql root 4.0K Dec 2 22:29 mysql
$ ls -la /var/ | grep lib
drwxr-xr-x 29 root root 4.0K Nov 28 19:59 lib
$ ls -la / | grep var
drwxr-xr-x 13 root root 4.0K Nov 28 19:58 var
so anyone tell me what permissions I have gotten wrong & how can I get mysql to work again?
Last edited by cool (2012-12-02 18:26:18)

1. You have to start mysqld as root using either sudo or from your root account
2. The safest way to start mysql is using the unit file (systemd) or service file (rc.d) -- e.g. 'sudo systemctl mysqld start'
3. My /var/lib/mysql directory has the following permissions 700 and owner/group is mysql/mysql. With those permissions, you're not going to be able to view the contents of the directory unless you are root or that user.
Scott

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    [ 6.006] (II) modeset(0): 640x480@67Hz
    [ 6.006] (II) modeset(0): 640x480@72Hz
    [ 6.006] (II) modeset(0): 640x480@75Hz
    [ 6.006] (II) modeset(0): 800x600@56Hz
    [ 6.006] (II) modeset(0): 800x600@60Hz
    [ 6.006] (II) modeset(0): 800x600@72Hz
    [ 6.006] (II) modeset(0): 800x600@75Hz
    [ 6.006] (II) modeset(0): 832x624@75Hz
    [ 6.006] (II) modeset(0): 1024x768@60Hz
    [ 6.006] (II) modeset(0): 1024x768@70Hz
    [ 6.006] (II) modeset(0): 1024x768@75Hz
    [ 6.006] (II) modeset(0): 1280x1024@75Hz
    [ 6.006] (II) modeset(0): 1152x864@75Hz
    [ 6.006] (II) modeset(0): Manufacturer's mask: 0
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    [ 6.006] (II) modeset(0): #0: hsize: 1152 vsize 864 refresh: 75 vid: 20337
    [ 6.006] (II) modeset(0): #1: hsize: 1280 vsize 800 refresh: 60 vid: 129
    [ 6.006] (II) modeset(0): #2: hsize: 1280 vsize 960 refresh: 60 vid: 16513
    [ 6.006] (II) modeset(0): #3: hsize: 1280 vsize 1024 refresh: 60 vid: 32897
    [ 6.006] (II) modeset(0): #4: hsize: 1440 vsize 900 refresh: 60 vid: 149
    [ 6.006] (II) modeset(0): #5: hsize: 1440 vsize 900 refresh: 75 vid: 3989
    [ 6.007] (II) modeset(0): #6: hsize: 1600 vsize 1200 refresh: 60 vid: 16553
    [ 6.007] (II) modeset(0): #7: hsize: 1680 vsize 1050 refresh: 60 vid: 179
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    [ 6.007] (II) modeset(0): clock: 148.5 MHz Image Size: 509 x 286 mm
    [ 6.007] (II) modeset(0): h_active: 1920 h_sync: 2008 h_sync_end 2052 h_blank_end 2200 h_border: 0
    [ 6.007] (II) modeset(0): v_active: 1080 v_sync: 1084 v_sync_end 1089 v_blanking: 1125 v_border: 0
    [ 6.007] (II) modeset(0): Supported detailed timing:
    [ 6.007] (II) modeset(0): clock: 74.2 MHz Image Size: 509 x 286 mm
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    [ 6.007] (II) modeset(0): Ranges: V min: 50 V max: 75 Hz, H min: 31 H max: 81 kHz, PixClock max 175 MHz
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    [ 6.007] (II) modeset(0): Supported detailed timing:
    [ 6.007] (II) modeset(0): clock: 27.0 MHz Image Size: 509 x 286 mm
    [ 6.007] (II) modeset(0): h_active: 720 h_sync: 732 h_sync_end 796 h_blank_end 864 h_border: 0
    [ 6.007] (II) modeset(0): v_active: 576 v_sync: 581 v_sync_end 586 v_blanking: 625 v_border: 0
    [ 6.007] (II) modeset(0): Supported detailed timing:
    [ 6.007] (II) modeset(0): clock: 27.0 MHz Image Size: 509 x 286 mm
    [ 6.007] (II) modeset(0): h_active: 720 h_sync: 736 h_sync_end 798 h_blank_end 858 h_border: 0
    [ 6.007] (II) modeset(0): v_active: 480 v_sync: 489 v_sync_end 495 v_blanking: 525 v_border: 0
    [ 6.007] (II) modeset(0): Number of EDID sections to follow: 1
    [ 6.007] (II) modeset(0): EDID (in hex):
    [ 6.007] (II) modeset(0): 00ffffffffffff004c2d6f0735433242
    [ 6.007] (II) modeset(0): 0815010380331d782aee91a3544c9926
    [ 6.007] (II) modeset(0): 0f5054bfef80714f8100814081809500
    [ 6.007] (II) modeset(0): 950fa940b300023a801871382d40582c
    [ 6.007] (II) modeset(0): 4500fd1e1100001e011d007251d01e20
    [ 6.007] (II) modeset(0): 6e285500fd1e1100001e000000fd0032
    [ 6.007] (II) modeset(0): 4b1f5111000a202020202020000000fc
    [ 6.007] (II) modeset(0): 00534d4258323333310a2020202001ee
    [ 6.007] (II) modeset(0): 02031cf14890041f0514131203230907
    [ 6.007] (II) modeset(0): 078301000066030c00100080011d80d0
    [ 6.007] (II) modeset(0): 721c1620102c2580fd1e1100009e011d
    [ 6.007] (II) modeset(0): 8018711c1620582c2500fd1e1100009e
    [ 6.007] (II) modeset(0): 011d00bc52d01e20b8285540fd1e1100
    [ 6.007] (II) modeset(0): 001e8c0ad090204031200c405500fd1e
    [ 6.007] (II) modeset(0): 110000188c0ad08a20e02d10103e9600
    [ 6.007] (II) modeset(0): fd1e110000180000000000000000004c
    [ 6.007] (II) modeset(0): Not using default mode "1600x1200" (bad mode clock/interlace/doublescan)
    [ 6.007] (II) modeset(0): Not using default mode "1600x1200" (bad mode clock/interlace/doublescan)
    [ 6.007] (II) modeset(0): Printing probed modes for output DVI-0
    [ 6.007] (II) modeset(0): Modeline "1920x1080"x60.0 148.50 1920 2008 2052 2200 1080 1084 1089 1125 +hsync +vsync (67.5 kHz eP)
    [ 6.007] (II) modeset(0): Modeline "1920x1080"x50.0 148.50 1920 2448 2492 2640 1080 1084 1089 1125 +hsync +vsync (56.2 kHz e)
    [ 6.007] (II) modeset(0): Modeline "1920x1080"x59.9 148.35 1920 2008 2052 2200 1080 1084 1089 1125 +hsync +vsync (67.4 kHz e)
    [ 6.007] (II) modeset(0): Modeline "1600x1200"x65.0 175.50 1600 1664 1856 2160 1200 1201 1204 1250 +hsync +vsync (81.2 kHz d)
    [ 6.007] (II) modeset(0): Modeline "1600x1200"x60.0 162.00 1600 1664 1856 2160 1200 1201 1204 1250 +hsync +vsync (75.0 kHz e)
    [ 6.007] (II) modeset(0): Modeline "1680x1050"x59.9 119.00 1680 1728 1760 1840 1050 1053 1059 1080 +hsync -vsync (64.7 kHz e)
    [ 6.007] (II) modeset(0): Modeline "1400x1050"x74.8 155.80 1400 1464 1784 1912 1050 1052 1064 1090 +hsync +vsync (81.5 kHz d)
    [ 6.007] (II) modeset(0): Modeline "1400x1050"x60.0 122.00 1400 1488 1640 1880 1050 1052 1064 1082 +hsync +vsync (64.9 kHz d)
    [ 6.007] (II) modeset(0): Modeline "1280x1024"x75.0 135.00 1280 1296 1440 1688 1024 1025 1028 1066 +hsync +vsync (80.0 kHz e)
    [ 6.007] (II) modeset(0): Modeline "1280x1024"x60.0 108.00 1280 1328 1440 1688 1024 1025 1028 1066 +hsync +vsync (64.0 kHz e)
    [ 6.007] (II) modeset(0): Modeline "1440x900"x75.0 136.75 1440 1536 1688 1936 900 903 909 942 -hsync +vsync (70.6 kHz e)
    [ 6.007] (II) modeset(0): Modeline "1440x900"x59.9 88.75 1440 1488 1520 1600 900 903 909 926 +hsync -vsync (55.5 kHz e)
    [ 6.007] (II) modeset(0): Modeline "1280x960"x60.0 108.00 1280 1376 1488 1800 960 961 964 1000 +hsync +vsync (60.0 kHz e)
    [ 6.007] (II) modeset(0): Modeline "1280x800"x59.9 71.00 1280 1328 1360 1440 800 803 809 823 +hsync -vsync (49.3 kHz e)
    [ 6.007] (II) modeset(0): Modeline "1152x864"x75.0 108.00 1152 1216 1344 1600 864 865 868 900 +hsync +vsync (67.5 kHz e)
    [ 6.007] (II) modeset(0): Modeline "1280x720"x60.0 74.25 1280 1390 1430 1650 720 725 730 750 +hsync +vsync (45.0 kHz e)
    [ 6.007] (II) modeset(0): Modeline "1280x720"x50.0 74.25 1280 1720 1760 1980 720 725 730 750 +hsync +vsync (37.5 kHz e)
    [ 6.007] (II) modeset(0): Modeline "1280x720"x59.9 74.18 1280 1390 1430 1650 720 725 730 750 +hsync +vsync (45.0 kHz e)
    [ 6.007] (II) modeset(0): Modeline "1024x768"x75.0 170.24 1024 1108 1220 1416 768 768 770 801 doublescan -hsync +vsync (120.2 kHz d)
    [ 6.007] (II) modeset(0): Modeline "1024x768"x60.0 133.47 1024 1100 1212 1400 768 768 770 794 doublescan -hsync +vsync (95.3 kHz d)
    [ 6.007] (II) modeset(0): Modeline "1024x768"x75.1 78.80 1024 1040 1136 1312 768 769 772 800 +hsync +vsync (60.1 kHz e)
    [ 6.007] (II) modeset(0): Modeline "1024x768"x75.0 78.75 1024 1040 1136 1312 768 769 772 800 +hsync +vsync (60.0 kHz d)
    [ 6.007] (II) modeset(0): Modeline "1024x768"x70.1 75.00 1024 1048 1184 1328 768 771 777 806 -hsync -vsync (56.5 kHz e)
    [ 6.007] (II) modeset(0): Modeline "1024x768"x60.0 65.00 1024 1048 1184 1344 768 771 777 806 -hsync -vsync (48.4 kHz e)
    [ 6.008] (II) modeset(0): Modeline "960x720"x75.0 148.50 960 1032 1144 1320 720 720 722 750 doublescan -hsync +vsync (112.5 kHz d)
    [ 6.008] (II) modeset(0): Modeline "960x720"x60.0 117.00 960 1024 1128 1300 720 720 722 750 doublescan -hsync +vsync (90.0 kHz d)
    [ 6.008] (II) modeset(0): Modeline "928x696"x75.0 144.00 928 992 1104 1280 696 696 698 750 doublescan -hsync +vsync (112.5 kHz d)
    [ 6.008] (II) modeset(0): Modeline "928x696"x60.1 109.15 928 976 1088 1264 696 696 698 719 doublescan -hsync +vsync (86.4 kHz d)
    [ 6.008] (II) modeset(0): Modeline "896x672"x75.0 130.50 896 944 1052 1228 672 672 674 708 doublescan -hsync +vsync (106.3 kHz d)
    [ 6.008] (II) modeset(0): Modeline "896x672"x60.0 102.40 896 960 1060 1224 672 672 674 697 doublescan -hsync +vsync (83.7 kHz d)
    [ 6.008] (II) modeset(0): Modeline "832x624"x74.6 57.28 832 864 928 1152 624 625 628 667 -hsync -vsync (49.7 kHz e)
    [ 6.008] (II) modeset(0): Modeline "800x600"x75.0 101.25 800 832 928 1080 600 600 602 625 doublescan +hsync +vsync (93.8 kHz d)
    [ 6.008] (II) modeset(0): Modeline "800x600"x70.0 94.50 800 832 928 1080 600 600 602 625 doublescan +hsync +vsync (87.5 kHz d)
    [ 6.008] (II) modeset(0): Modeline "800x600"x65.0 87.75 800 832 928 1080 600 600 602 625 doublescan +hsync +vsync (81.2 kHz d)
    [ 6.008] (II) modeset(0): Modeline "800x600"x60.0 81.00 800 832 928 1080 600 600 602 625 doublescan +hsync +vsync (75.0 kHz d)
    [ 6.008] (II) modeset(0): Modeline "800x600"x72.2 50.00 800 856 976 1040 600 637 643 666 +hsync +vsync (48.1 kHz e)
    [ 6.008] (II) modeset(0): Modeline "800x600"x75.0 49.50 800 816 896 1056 600 601 604 625 +hsync +vsync (46.9 kHz e)
    [ 6.008] (II) modeset(0): Modeline "800x600"x60.3 40.00 800 840 968 1056 600 601 605 628 +hsync +vsync (37.9 kHz e)
    [ 6.008] (II) modeset(0): Modeline "800x600"x56.2 36.00 800 824 896 1024 600 601 603 625 +hsync +vsync (35.2 kHz e)
    [ 6.008] (II) modeset(0): Modeline "720x576"x50.0 27.00 720 732 796 864 576 581 586 625 -hsync -vsync (31.2 kHz e)
    [ 6.008] (II) modeset(0): Modeline "700x525"x74.8 77.90 700 732 892 956 525 526 532 545 doublescan +hsync +vsync (81.5 kHz d)
    [ 6.008] (II) modeset(0): Modeline "700x525"x60.0 61.00 700 744 820 940 525 526 532 541 doublescan +hsync +vsync (64.9 kHz d)
    [ 6.008] (II) modeset(0): Modeline "720x480"x60.0 27.03 720 736 798 858 480 489 495 525 -hsync -vsync (31.5 kHz e)
    [ 6.008] (II) modeset(0): Modeline "720x480"x59.9 27.00 720 736 798 858 480 489 495 525 -hsync -vsync (31.5 kHz e)
    [ 6.008] (II) modeset(0): Modeline "640x512"x75.0 67.50 640 648 720 844 512 512 514 533 doublescan +hsync +vsync (80.0 kHz d)
    [ 6.008] (II) modeset(0): Modeline "640x512"x60.0 54.00 640 664 720 844 512 512 514 533 doublescan +hsync +vsync (64.0 kHz d)
    [ 6.008] (II) modeset(0): Modeline "640x480"x60.0 54.00 640 688 744 900 480 480 482 500 doublescan +hsync +vsync (60.0 kHz d)
    [ 6.008] (II) modeset(0): Modeline "640x480"x75.0 31.50 640 656 720 840 480 481 484 500 -hsync -vsync (37.5 kHz e)
    [ 6.008] (II) modeset(0): Modeline "640x480"x72.8 31.50 640 664 704 832 480 489 491 520 -hsync -vsync (37.9 kHz e)
    [ 6.008] (II) modeset(0): Modeline "640x480"x72.8 31.50 640 664 704 832 480 489 492 520 -hsync -vsync (37.9 kHz d)
    [ 6.008] (II) modeset(0): Modeline "640x480"x75.0 31.50 640 656 720 840 480 481 484 500 -hsync -vsync (37.5 kHz d)
    [ 6.008] (II) modeset(0): Modeline "640x480"x66.7 30.24 640 704 768 864 480 483 486 525 -hsync -vsync (35.0 kHz e)
    [ 6.008] (II) modeset(0): Modeline "640x480"x60.0 25.20 640 656 752 800 480 490 492 525 -hsync -vsync (31.5 kHz e)
    [ 6.008] (II) modeset(0): Modeline "640x480"x59.9 25.18 640 656 752 800 480 490 492 525 -hsync -vsync (31.5 kHz e)
    [ 6.008] (II) modeset(0): Modeline "720x400"x70.1 28.32 720 738 846 900 400 412 414 449 -hsync +vsync (31.5 kHz e)
    [ 6.008] (II) modeset(0): Modeline "576x432"x75.0 54.00 576 608 672 800 432 432 434 450 doublescan +hsync +vsync (67.5 kHz d)
    [ 6.008] (II) modeset(0): Modeline "512x384"x75.0 39.38 512 520 568 656 384 384 386 400 doublescan +hsync +vsync (60.0 kHz d)
    [ 6.008] (II) modeset(0): Modeline "512x384"x70.1 37.50 512 524 592 664 384 385 388 403 doublescan -hsync -vsync (56.5 kHz d)
    [ 6.008] (II) modeset(0): Modeline "512x384"x60.0 32.50 512 524 592 672 384 385 388 403 doublescan -hsync -vsync (48.4 kHz d)
    [ 6.008] (II) modeset(0): Modeline "416x312"x74.7 28.64 416 432 464 576 312 312 314 333 doublescan -hsync -vsync (49.7 kHz d)
    [ 6.008] (II) modeset(0): Modeline "400x300"x72.2 25.00 400 428 488 520 300 318 321 333 doublescan +hsync +vsync (48.1 kHz d)
    [ 6.008] (II) modeset(0): Modeline "400x300"x75.1 24.75 400 408 448 528 300 300 302 312 doublescan +hsync +vsync (46.9 kHz d)
    [ 6.008] (II) modeset(0): Modeline "400x300"x60.3 20.00 400 420 484 528 300 300 302 314 doublescan +hsync +vsync (37.9 kHz d)
    [ 6.008] (II) modeset(0): Modeline "400x300"x56.3 18.00 400 412 448 512 300 300 301 312 doublescan +hsync +vsync (35.2 kHz d)
    [ 6.008] (II) modeset(0): Modeline "320x240"x72.8 15.75 320 332 352 416 240 244 246 260 doublescan -hsync -vsync (37.9 kHz d)
    [ 6.008] (II) modeset(0): Modeline "320x240"x75.0 15.75 320 328 360 420 240 240 242 250 doublescan -hsync -vsync (37.5 kHz d)
    [ 6.008] (II) modeset(0): Modeline "320x240"x60.1 12.59 320 328 376 400 240 245 246 262 doublescan -hsync -vsync (31.5 kHz d)
    [ 6.063] (II) modeset(0): EDID for output DVI-1
    [ 6.116] (II) modeset(0): EDID for output TV-0
    [ 6.116] (II) modeset(0): Output DVI-0 connected
    [ 6.116] (II) modeset(0): Output DVI-1 disconnected
    [ 6.116] (II) modeset(0): Output TV-0 disconnected
    [ 6.116] (II) modeset(0): Using exact sizes for initial modes
    [ 6.116] (II) modeset(0): Output DVI-0 using initial mode 1920x1080
    [ 6.116] (II) modeset(0): Using default gamma of (1.0, 1.0, 1.0) unless otherwise stated.
    [ 6.116] (==) modeset(0): DPI set to (96, 96)
    [ 6.116] (II) Loading sub module "fb"
    [ 6.116] (II) LoadModule: "fb"
    [ 6.117] (II) Loading /usr/lib/xorg/modules/libfb.so
    [ 6.118] (II) Module fb: vendor="X.Org Foundation"
    [ 6.118] compiled for 1.17.1, module version = 1.0.0
    [ 6.118] ABI class: X.Org ANSI C Emulation, version 0.4
    [ 6.118] (==) Depth 24 pixmap format is 32 bpp
    [ 6.462] (==) modeset(0): Backing store disabled
    [ 6.462] (==) modeset(0): Silken mouse enabled
    [ 6.464] (II) modeset(0): RandR 1.2 enabled, ignore the following RandR disabled message.
    [ 6.535] (==) modeset(0): DPMS enabled
    [ 6.535] (WW) modeset(0): Option "EXANoComposite" is not used
    [ 6.535] (II) modeset(0): [DRI2] Setup complete
    [ 6.535] (II) modeset(0): [DRI2] DRI driver: nouveau
    [ 6.535] (II) modeset(0): [DRI2] VDPAU driver: nouveau
    [ 6.535] (--) RandR disabled
    [ 6.551] (II) AIGLX: enabled GLX_MESA_copy_sub_buffer
    [ 6.551] (II) AIGLX: enabled GLX_ARB_create_context
    [ 6.551] (II) AIGLX: enabled GLX_ARB_create_context_profile
    [ 6.551] (II) AIGLX: enabled GLX_EXT_create_context_es2_profile
    [ 6.551] (II) AIGLX: enabled GLX_INTEL_swap_event
    [ 6.551] (II) AIGLX: enabled GLX_SGI_swap_control and GLX_MESA_swap_control
    [ 6.551] (II) AIGLX: enabled GLX_EXT_framebuffer_sRGB
    [ 6.551] (II) AIGLX: enabled GLX_ARB_fbconfig_float
    [ 6.551] (II) AIGLX: GLX_EXT_texture_from_pixmap backed by buffer objects
    [ 6.552] (II) AIGLX: Loaded and initialized nouveau
    [ 6.552] (II) GLX: Initialized DRI2 GL provider for screen 0
    [ 6.559] (II) modeset(0): Setting screen physical size to 507 x 285
    [ 6.741] (II) config/udev: Adding input device Power Button (/dev/input/event3)
    [ 6.741] (**) Power Button: Applying InputClass "evdev keyboard catchall"
    [ 6.741] (**) Power Button: Applying InputClass "Keyboard Defaults"
    [ 6.741] (II) LoadModule: "evdev"
    [ 6.741] (II) Loading /usr/lib/xorg/modules/input/evdev_drv.so
    [ 6.744] (II) Module evdev: vendor="X.Org Foundation"
    [ 6.744] compiled for 1.16.2, module version = 2.9.1
    [ 6.744] Module class: X.Org XInput Driver
    [ 6.744] ABI class: X.Org XInput driver, version 21.0
    [ 6.744] (II) Using input driver 'evdev' for 'Power Button'
    [ 6.744] (**) Power Button: always reports core events
    [ 6.744] (**) evdev: Power Button: Device: "/dev/input/event3"
    [ 6.744] (--) evdev: Power Button: Vendor 0 Product 0x1
    [ 6.744] (--) evdev: Power Button: Found keys
    [ 6.744] (II) evdev: Power Button: Configuring as keyboard
    [ 6.744] (**) Option "config_info" "udev:/sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input3/event3"
    [ 6.744] (II) XINPUT: Adding extended input device "Power Button" (type: KEYBOARD, id 6)
    [ 6.744] (**) Option "xkb_rules" "evdev"
    [ 6.744] (**) Option "xkb_model" "pc104"
    [ 6.744] (**) Option "xkb_layout" "us"
    [ 6.744] (**) Option "xkb_options" "terminate:ctrl_alt_bksp"
    [ 6.780] (II) config/udev: Adding input device Power Button (/dev/input/event2)
    [ 6.780] (**) Power Button: Applying InputClass "evdev keyboard catchall"
    [ 6.780] (**) Power Button: Applying InputClass "Keyboard Defaults"
    [ 6.780] (II) Using input driver 'evdev' for 'Power Button'
    [ 6.780] (**) Power Button: always reports core events
    [ 6.780] (**) evdev: Power Button: Device: "/dev/input/event2"
    [ 6.780] (--) evdev: Power Button: Vendor 0 Product 0x1
    [ 6.780] (--) evdev: Power Button: Found keys
    [ 6.780] (II) evdev: Power Button: Configuring as keyboard
    [ 6.780] (**) Option "config_info" "udev:/sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0C:00/input/input2/event2"
    [ 6.780] (II) XINPUT: Adding extended input device "Power Button" (type: KEYBOARD, id 7)
    [ 6.780] (**) Option "xkb_rules" "evdev"
    [ 6.780] (**) Option "xkb_model" "pc104"
    [ 6.780] (**) Option "xkb_layout" "us"
    [ 6.780] (**) Option "xkb_options" "terminate:ctrl_alt_bksp"
    [ 6.781] (II) config/udev: Adding input device HDA Digital PCBeep (/dev/input/event4)
    [ 6.781] (II) No input driver specified, ignoring this device.
    [ 6.781] (II) This device may have been added with another device file.
    [ 6.782] (II) config/udev: Adding input device HDA Intel Line Out Side (/dev/input/event10)
    [ 6.782] (II) No input driver specified, ignoring this device.
    [ 6.782] (II) This device may have been added with another device file.
    [ 6.782] (II) config/udev: Adding input device HDA Intel Rear Mic (/dev/input/event5)
    [ 6.782] (II) No input driver specified, ignoring this device.
    [ 6.782] (II) This device may have been added with another device file.
    [ 6.782] (II) config/udev: Adding input device HDA Intel Line (/dev/input/event6)
    [ 6.782] (II) No input driver specified, ignoring this device.
    [ 6.782] (II) This device may have been added with another device file.
    [ 6.783] (II) config/udev: Adding input device HDA Intel Line Out Front (/dev/input/event7)
    [ 6.783] (II) No input driver specified, ignoring this device.
    [ 6.783] (II) This device may have been added with another device file.
    [ 6.783] (II) config/udev: Adding input device HDA Intel Line Out Surround (/dev/input/event8)
    [ 6.783] (II) No input driver specified, ignoring this device.
    [ 6.783] (II) This device may have been added with another device file.
    [ 6.783] (II) config/udev: Adding input device HDA Intel Line Out CLFE (/dev/input/event9)
    [ 6.783] (II) No input driver specified, ignoring this device.
    [ 6.783] (II) This device may have been added with another device file.
    [ 6.784] (II) config/udev: Adding input device Logitech USB-PS/2 Optical Mouse (/dev/input/event1)
    [ 6.784] (**) Logitech USB-PS/2 Optical Mouse: Applying InputClass "evdev pointer catchall"
    [ 6.784] (II) Using input driver 'evdev' for 'Logitech USB-PS/2 Optical Mouse'
    [ 6.784] (**) Logitech USB-PS/2 Optical Mouse: always reports core events
    [ 6.784] (**) evdev: Logitech USB-PS/2 Optical Mouse: Device: "/dev/input/event1"
    [ 6.784] (--) evdev: Logitech USB-PS/2 Optical Mouse: Vendor 0x46d Product 0xc050
    [ 6.784] (--) evdev: Logitech USB-PS/2 Optical Mouse: Found 12 mouse buttons
    [ 6.784] (--) evdev: Logitech USB-PS/2 Optical Mouse: Found scroll wheel(s)
    [ 6.784] (--) evdev: Logitech USB-PS/2 Optical Mouse: Found relative axes
    [ 6.784] (--) evdev: Logitech USB-PS/2 Optical Mouse: Found x and y relative axes
    [ 6.784] (II) evdev: Logitech USB-PS/2 Optical Mouse: Configuring as mouse
    [ 6.784] (II) evdev: Logitech USB-PS/2 Optical Mouse: Adding scrollwheel support
    [ 6.784] (**) evdev: Logitech USB-PS/2 Optical Mouse: YAxisMapping: buttons 4 and 5
    [ 6.784] (**) evdev: Logitech USB-PS/2 Optical Mouse: EmulateWheelButton: 4, EmulateWheelInertia: 10, EmulateWheelTimeout: 200
    [ 6.784] (**) Option "config_info" "udev:/sys/devices/pci0000:00/0000:00:1d.1/usb6/6-1/6-1:1.0/0003:046D:C050.0001/input/input1/event1"
    [ 6.784] (II) XINPUT: Adding extended input device "Logitech USB-PS/2 Optical Mouse" (type: MOUSE, id 8)
    [ 6.784] (II) evdev: Logitech USB-PS/2 Optical Mouse: initialized for relative axes.
    [ 6.784] (**) Logitech USB-PS/2 Optical Mouse: (accel) keeping acceleration scheme 1
    [ 6.784] (**) Logitech USB-PS/2 Optical Mouse: (accel) acceleration profile 0
    [ 6.784] (**) Logitech USB-PS/2 Optical Mouse: (accel) acceleration factor: 2.000
    [ 6.784] (**) Logitech USB-PS/2 Optical Mouse: (accel) acceleration threshold: 4
    [ 6.785] (II) config/udev: Adding input device Logitech USB-PS/2 Optical Mouse (/dev/input/mouse0)
    [ 6.785] (II) No input driver specified, ignoring this device.
    [ 6.785] (II) This device may have been added with another device file.
    [ 6.785] (II) config/udev: Adding input device AT Translated Set 2 keyboard (/dev/input/event0)
    [ 6.785] (**) AT Translated Set 2 keyboard: Applying InputClass "evdev keyboard catchall"
    [ 6.785] (**) AT Translated Set 2 keyboard: Applying InputClass "Keyboard Defaults"
    [ 6.785] (II) Using input driver 'evdev' for 'AT Translated Set 2 keyboard'
    [ 6.785] (**) AT Translated Set 2 keyboard: always reports core events
    [ 6.785] (**) evdev: AT Translated Set 2 keyboard: Device: "/dev/input/event0"
    [ 6.785] (--) evdev: AT Translated Set 2 keyboard: Vendor 0x1 Product 0x1
    [ 6.785] (--) evdev: AT Translated Set 2 keyboard: Found keys
    [ 6.785] (II) evdev: AT Translated Set 2 keyboard: Configuring as keyboard
    [ 6.785] (**) Option "config_info" "udev:/sys/devices/platform/i8042/serio0/input/input0/event0"
    [ 6.785] (II) XINPUT: Adding extended input device "AT Translated Set 2 keyboard" (type: KEYBOARD, id 9)
    [ 6.785] (**) Option "xkb_rules" "evdev"
    [ 6.785] (**) Option "xkb_model" "pc104"
    [ 6.785] (**) Option "xkb_layout" "us"
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    [ 6.804] (EE) 1: ? (?+0x132) [0xb7787cc5]
    [ 6.804] (EE) 2: /usr/lib/xorg/modules/drivers/modesetting_drv.so (_init+0x4cd7) [0xb6e2a1c7]
    [ 6.806] (EE) 3: /usr/lib/xorg-server/Xorg (xf86_show_cursors+0x688) [0x80f9008]
    [ 6.806] (EE) 4: /usr/lib/xorg-server/Xorg (xf86DestroyCursorInfoRec+0xcf8) [0x8103fc8]
    [ 6.806] (EE) 5: /usr/lib/xorg-server/Xorg (RamDacHandleColormaps+0x67b) [0x810218b]
    [ 6.807] (EE) 6: /usr/lib/xorg-server/Xorg (miPointerUpdateSprite+0x25d) [0x81c648d]
    [ 6.808] (EE) 7: /usr/lib/xorg-server/Xorg (miPointerUpdateSprite+0x4c1) [0x81c6b31]
    [ 6.808] (EE) 8: /usr/lib/xorg-server/Xorg (CompositeRegisterImplicitRedirectionException+0x4199) [0x8114399]
    [ 6.809] (EE) 9: /usr/lib/xorg-server/Xorg (PanoramiXRenderReset+0x72a) [0x815915a]
    [ 6.810] (EE) 10: /usr/lib/xorg-server/Xorg (ConfineToShape+0x9f1) [0x80843b1]
    [ 6.810] (EE) 11: /usr/lib/xorg-server/Xorg (WindowHasNewCursor+0x3b) [0x8084f2b]
    [ 6.810] (EE) 12: /usr/lib/xorg-server/Xorg (ChangeWindowAttributes+0xb7c) [0x80aa9ec]
    [ 6.811] (EE) 13: /usr/lib/xorg-server/Xorg (ProcBadRequest+0x209) [0x8074a49]
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    [ 6.811] (EE) 15: /usr/lib/xorg-server/Xorg (remove_fs_handlers+0x42f) [0x807edaf]
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    [ 6.814] (EE)
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    Problem solved, had to reinstall pygobject. It looks like after last update many pacakges were corrupted and now Ia have to reinstall them, do You know any way to automatically reinstall all corrupted packages?
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