Some images will not be removed from LR catalog

I was cleaning up the catalog by removing files that were flagged "reject" and not on the HDDs any longer.
In LR Grid view, show "all images"
Filter by "rejected only"
Select all, Cmd+backspace > Remove
Lightroom deselects all, then goes on to "remove" and stalls after the progress bar got at about 10%.
Force quit LR, second try identical.
Updated LR from 2.3 to 2.4
Same problem
Tried the same on a recent backup catalog. Same result.
Finally managed to get rid of most of the rejected & deleted images by using "Sync folder", and it appears I might have found the problem (but not yet the solution):
LR somehow "remembers" 190 images from an old shoot: These images were also in LR in a different folder. Removing that folder from LR didn't give an error, but didn't solve the issue.
Here's a screenshot. Images on the right are actually on the HDD. Images on the left (represented by "empty" thumbnails) are *not* in the LR catalog. LR also knows this, as it will not show the folder of the "ghost images" in the library.
The "empty" thumbnails and corresponding thumbs in the bottom are gray until you mouse over them or scroll...
My images are either on external HDDs or on a secondary internal HDD. LR catalog on secondary internal HDD.
Mounting / unmounting of the externals makes no difference.
Plenty memory and free disk space.
For the rest LR is working fine. Not lightning fast, but hey, it's a G5 .
No error messages. Catalog back ups & optimizes without error message.
Tried creating a new catalog, and import this one:
The old catalog isn't *that* huge (about 11k images), and about 330Mb.
LR is about 30% into "Checking Photo Locations", and it appears to be stalling... Processor usage of about 3% No disk activity that I can see. Cancel just cancels, without any dialog.
Tried a few times & it just doesn't seem to work.
Exporting the latest images to a catalog also does nothing (no dialog, no action).
Started a new catalog, imported the latest batch of images again, and hope for the best.
Still, a solution would be nice. I do *not* fancy importing 11000 images again.
In the new catalog, export as catalog works, so there's definitely something wonky in the old catalog...

Rene-
Mounting of externals where you are giving the command to delete images will certainly make a difference. Don't know if that's part of your problem or not, but in general, LR doesn't always do well with the X followed by Cmd-Delete (Mac)- sometimes it will say there aren't any, and I'll just repeat and there they are. I have tended to delete after a session, so never deleted more than say 50 images at once.
I'd continue deleting all you have so marked, then go through and hook up images with the ? mark, followed by deleting the Previews folder if the first two steps don't help. This latter is radical, but sometimes the Previews folder gets frazzled. What size .lrcat and what size Previews folder?

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