Some photos missing since Time Machine restore...

Hi All,
I have been looking through the forum to find an answer to this, but I haven't seen anyone else with this exact problem.
2009 iMac, Snow Leopard
I had to erase my drive and do a clean install. That went well, and I used Time Machine, and Migration assistant to bring all of my users, docs and media back in.
When I open iPhoto some of the thumbnails in the events browser are missing. Just a gray box. If I double click the Event, a window opens and I can see the thumbnails of the photos in that event. If I click on one of the thumbnails, I get the white exclamation point.
It get's weirder...
All the photos that are missing seem to be ones taken with our iPhones. Not every photo from the iPhones is missing however, only some, mostly recent, but a couple of 2008 events too, just to further confuse things . All the photos we imported from our regular camera are all still there.
It gets weirder...
When I first open iPhoto, if I quickly scroll down in the events browser to the area of missing thumbnails, I can see all of the thumbnails for a brief moment, then they disappear. This doesn't happen every time, only occasionally.
If I hover over the gray event boxes, the pop up still tells me the date and number of photos in the event. Those numbers match the number of thumbs in the event when I double click, but I just can't open the photo.
I have tried rebuilding the thumbnails and searching for orphaned photos.
I have not tried rebuilding from the auto backup, because I recently restored the whole system and didn't know if I still had a "good" auto back-up and didn't want to inadvertently screw things up further...
I am really at a loss here and would appreciate any suggestions...
Thanks in advance!

The exclamation point is an indication that the library has lost the link to the original file. Run the three fixes below in order as needed:
Fix #1
Launch iPhoto with the Command+Option keys depressed and follow the instructions to rebuild the library. Select options #4,5 and 6.
Fix #2
Rebuild the library using iPhoto Library Manager as follows:
Using iPhoto Library Manager to Rebuild Your iPhoto Library
1 -Download iPhoto Library Manager and launch.
2 -Click on the Add Library button, navigate to your User/Pictures folder and select your iPhoto Library folder.
3 - Now that the library is listed in the left hand pane of iPLM, click on your library and go to the File->Rebuild Library menu option
4 - In the next window name the new library and select the location you want it to be placed.
5 - Click on the Create button.
Note: It may take some time to create the new library if you have a lot of photos.
Fix #3
Start over with a new library and import the Originals folder from your original library as follows:
Creating a new library while preserving the Events from the original library.
1. Move the existing library folder to the desktop.
2. Open the library package like this.
3. Launch iPhoto and, when asked, select the option to create a new library.
4. Drag the Originals folder from the iPhoto Library on the desktop into the open iPhoto window.
This will create a new library with the same Events as the original library if you have the Finder checkbox unchecked in the Events preference pane.

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