Some tracks missing, some tabs didn't become collections

Editing my recently migrated public site (straight public-to-public migration), I discovered that tracks were missing. Digging deeper, it's clear that tracks added to our old public site after mid-2010 didn't get published to the new public site.
Also, several tabs in the old site didn't become collections in the new. Again, Im thinking it's all tabs created after summer 2010.
I know I checked out the Public Site Manager back in summer 2010, but I don't see how I could have done anything then to lock subsequent uploads to the old site out of publishing to the new -- I didn't publish to the new until just over a week ago.
Help, please. Do I need to re-upload all recent tracks?
http://itunes.apple.com/us/institution/suny-esf/id380140795
Cheers

No replies yet. I'm still hoping, but I have to start re-uploading files -- which may be even uglier than I thought, since the .mp4 files that published successfully to the old site return 'unsupported filetype' errors in the new. Sigh.
Cheers,
Otto

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