Sometimes JavaFX form (BorderPane) does not show correctly

We have a problem with a JavaFX application running on Java 7. Sometimes a form (BorderPane) does not show correctly – it seems to be transparent (i.e. content previously shown at the same place is still visible). Controls seem to be present and respond to events – e.g. we can close the form by blindly clicking the appropriate button. Once the issue happens it is persistent, i.e. next time we open the form, it behaves the same.
We have no reproducible scenario leading to the issue. It just happens here and there – we have not been able to identify any pattern yet.
Additional information:
the form (BorderPane) is loaded during application start-up but it is not shown initially,
to show the form we remove previous contents from a StackPane and add the form instead,
to hide the form we do the reverse.
Do you have any ideas how to diagnose the problem? Where to look first? What kind of diagnostic code could we put in the application that would help us?

I am unaware of any such issue being reported previously.
Without a reproducible test case, you are unlikely to get much assistance.
Other than the creation of a minimal test case which reproduces the issue, I could not even advise how you might go about diagnosing and fixing your issue.
There were many bug fixes implemented for Java 8.
I advise you to upgrade your test environment to the latest Java early access release (currently Java 8u40) and test to verify if your issue replicates in that version.
If the issue still reproduces, create a bug report which includes your test case and full environment details.

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