Songs playing silence on iPhone 4 despite full restore and playing fine in iTunes

I'm playing songs that play perfectly fine in iTunes, so the files are not corrupt. Some files were iTunes purchases (so cannot be converted), others imported from cds. These songs play fine at the start but then around halfway just play silence, while the counter keeps moving. If I move the counter back a bit it'll play the song to the exact point it silences. So it's how the file appears on its system. Deleting and reloading the file doesn't solve it.
This is with an iPhone 4 (not the 4S) and running software 6.1.3 with iTunes version 11.0.4.4.
I have attempted a full restore from a backup, and then reloaded all of my music, same songs, same problem. I don't feel a manual restore would help because that means reprogramming every single app, and the music would be reloaded the same way so what difference could that make?
Just to add insult to injury my protection plan ran out about 2 weeks ago and my phone otherwise works fine, so this can't possibly be worth purchasing another pricey plan just to be allowed to TALK to Apple.
Any advice that isn't repeating the above tried steps would be very appreciated!

MP3 is a lossy compression - the more you do it the more your music tracks will degrade. Re-encoding the songs which have already been encoded will gradually reduce the quality (much the same as photocopying a photocopy). If you really need to re-encode something it's best to take it from the source, i.e. rip from CD again.
Obviously this would be a bit time consuming for all your tracks, but I think if you really had to do this with your entire music collection every time iTunes is upgraded there must be something seriously wrong with iTunes.
If you have track problems there's probably something in your computer software which is conflicting with the processes going on in iTunes. In my case it appears to be my antivirus. Do a bit of detective work and try switching a few things off to narrow it down, but you shouldn't have to go through a laborious process of re-encoding which will eventually degrade the quality of your music.

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