Spot colors not being saved.

In CS6 I have been having random situations where the spot color channels are not saved when saving a .psd, regardless of the settings in the save dialog box. Any idea of why this might be happening? I've even had the program dump the spot colors from a multichannel document today while trying to find a workaround. I considered converting the spot colors to alpha channels as well, but there doesn't seem to be an obvious way to do that. Odd, as alpha to spot color conversion is just a radio button away. Any help would be appreciated, thanks!

This is on an Intel I Mac running Maverics 10.91 (lots of problems with that).
These are RGD documents at 8 bits per channel. The layers have always been merged at this point.
The spot colors involved are mostly book colors (Pantone Solid coated), though the program drops custom spot colors (u-white in the screen shot) as well on the occasions when it happens. This began occuring with CS6. I have noted in the forums that the book definitions may have changed, I am revising my actions to move to the current book definitions, though why this would affect a user defined spot color is unclear.In the cases where this occurs, only the "Art Mask" channel would be saved (it's an alpha).

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Spot colors not being saved.

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