Stabilizing video that moves vertically

Hi guys,
I am relatively new to Motion so apologies for anything obvious that I may have missed
I have a piece of video that I wish to stabilize in motion.
The piece of video is a rising shot where the camera starts behind an object which it is focused on, then as it moves up vertically it passes the top of the near object and focues on the background
The problem i am having is once I have analysed the motion of the clip, Motion takes the entire clip and moves it up vertically creating black space at the bottom of the clip
Any ideas how to fix this?
Cheers
Chris

Sorry realised the description of the video and issue is vague
Original Video: http://youtu.be/AbaebrGwYFE
Stabilised Video: http://youtu.be/RcCdDB18FV8

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