Started a project with the wrong format (plus another problem). Am I screwed?

I set up my project in 1080p 24 (23.98). Don't ask me what I was thinking, clearly I wasn't. I should have set it up as 720p 24.
Instead of transcoding all my 720p 60 (59.94) work files by log and capture, I just started dragging and dropping them in to the timeline and they conformed automatically of course to the project settings. Well now I'm trying to use Red Giant's Denoiser 2 and it's coming up with that "Draft Mode" crap. So I tried nesting a segment and dragging that into a new sequence but making sure the sequence was at 24fps. Now when I right click on that nested clip and look at the properties it says it's at 24fps, but when I try to use the denoiser, it says it "needs sample."
Did I utterly and completely screw myself here? Should I just chalk this one up to not using the denoiser and use it on my next project correctly? I have no idea how to keep everything sequenced, get all the individual clips properly saved to 24fps, and get the over all sequence in the correct 720p resolution.
The only work-around that I could think up, is to export the entire sequence in 720p 24 through compressor, but I'm afraid of compromising the quality. I really don't know how to render it that way but keeping the original apple Pro Res 422 HQ format.
Help! I'm about to lose my mind over here. I really put myself into a rookie pickle lol!

Yah, rookie move I know.
They came from a canon DSLR, so they are H.264 files.
I think I may have found another way to shoot this turkey. It's going to take some work though. I'll have to drag each clip from the browser window into a new timeline that is at the SAME frame rate as what I shot... 59.94. Then I'll have to replicate the entire sequence editing although I'll have the punch in and punch out points already set. Once everything is back in place the way I had it, and all my filters are applied (which will now work because the project is at the same framerate as the individual clips), then I can send the project to compressor and render it in 23.97 fps.
The only thing I won't know how to do at this point is take my slow motion shots that have been conformed from 59.94 to 29.97 and get them into the project which will now be set at 59.97.

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