Startup Disk full. I have external backup drive. Can I delete folders in My Lightroom photos?

I am using Mac Intel OSX Lion. I received a screen message that stated my startup disk is full. I am positive this is due to my 10,000 or so photos (mostly RAW files) stored in My Lightroom photos folders. Since my photos are externally  backed up can I delete those 9000-10,000 photos in various folders of My Lightroom? And by doing this do I free up disk space in my computer's hard drive?
I might also mention that photos created in LR5 are saved to folders in the Mac's Pictures area under "Favorites." So am I duplicating, i.e, doubling the file hogging capacity, because it is in Pictures and also in LR5. Any help is much appreciated.

Jim,
See my posted title: I backed up all 9000+ photos in 3 external hard drives. Two are full but the third still has a lot of capacity. All photos are saved in lossless .dng file. I don't have a problem going back to those external drive files if I want to do more post processing with the photos.  I fail to understand why my startup disk on the Mac is full as the great majority of file space taken up are from LR5 photos. I only have two or three Mac Applications: Swift Publisher and Quicken Essentials, both of which do not require huge hard disk space.
By the way, those 9000+ RAW files are also stored in Pictures in the Mac. 9000 files each about 20Mb I calculate to 180Gb. Am I right?

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