Startup Disk Won't Start, Disk Seems Fine

When I start up my computer using my main Startup Disk running 10.5.4, it sits at the Apple logo for a while with the dial rotating, and gradually the fan gets louder and louder. That's as far as it gets, it'll just sit there. Strangely enough, the computer works fine when I boot it from my other disk running 10.4.11, and I access all the information on the starup disk without any problems.
This all started an hour or so after I tried to update Quicktime, and had some kind of unarchiving error at the end. The computer would work alright, but locked up when using iTunes (which updated fine).
Thanks,
Michael

I never apply updates until and unless:
I have a cloned backup and both drives have been repaired with Disk Warrior;
And I apply combo update booted from 2nd drive to 1st. You might want to take it for a two-day test drive in some cases.
You do sound like there is problem with disk catalogue, directory, journaling, or more.
While Disk Utility may not find as many problems as Disk Warrior, even DW isn't a guarantee that you want to use the drive. Consider backing up while you can. It's possible to have a valid directory and journal, files are structurally okay, but the contents are not.
So I would avoid installing or updating a drive until I had cleaned it up and run more repairs. Delete the cache folders (System and Library) and the extensions.mkext file before repairs.

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