STP2 having issues with audio fixes

For the first month I had STP2 bringing audio files, whether from FCP or just AIFFs from standalone, I was always able to run the power line hum and clicks/pop analysis with no problem. I was even able to apply the fixes with no problem.
Now, just recently, I can run the analysis but when I try to apply the fixes it will get about 75% through the file and then STP2 will throw an error. The errors have changed from stating it couldn't write the file to just the application freezing to others I can't remember.
Anyone have the same problem or an idea on the fix? I have more than enough hard drive space and RAM to do this with, and never had a problem until recently. Even created a new user just to see if it was a corrupt install of the software or my OS, no luck.
Any help appreciated. Thanks.

Here is a screenshot of one of the errors.
Have trashed the preferences file, emptied the cache, and just about everything. No matter what file I bring in now it does this.
Message was edited by: Spider N Mann

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