Strange Bug in iBook Author?

Last year I created an iBook lab manual for my students.  The file size of the final book was around 750MB.  The file size proved to be too large and cumbersome to download and took a while for it to show up in iBooks.
This year I decided to chop up the manual.  I made a duplicate of the original file, cut out the later chapters, renamed it, and posted the first chapter online as an ibook. The book dowloaded and appeared in the iBooks app with no problem.
The problem began when I repeated the same process for chapter 2.  I duplicated the original file, deleted the unecessary chapters, renamed it, the posted it online.  This time, when the students downloaded the ibook, the iBook app launched chapter 1 and completely ignored chapter 2.  The chapter 2 ibook appeared to have gone through the proper download process, but as soon as the download was finished, the app launched, Chapter 1 opened, and chapter 2 was nowhere to be found.
I finally had to create a brand new file and cut and paste the chapters from the original file.  This is the only solution I came up with.  This didn't take a lot of work on my part; duplicating the original file, trimming the fat and renaming it is just easier.
Anyone have an idea what had occurred or why the iBook app refused to see Chapter 2 as a separate and new file?
Thank in advance.

I made a duplicate of the original file,
Mistake.
See this thread:
Exported ibook opening on random page
...and this one:
iBook Opening On Random Page - Understanding The Logic
...and this one...
How do I open make iBooks regognize two books created in iBA as different books/files? (iBooks opening separate books as the same file)
...and this iBA User Tip:
iBA Tips and Tricks 01 /How do I clone/copy an existing book for reuse to make another?

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