Subclip timecode issues for MultiClip edit...Help!?!?

Here is the issue. 2 camera shoot, Cameraman 1 pushed pause during a live concert video shoot.
In order to make a multiclip edit with the other camera's footage, I have made subclips of this camera's footage on each side of the pause.
The other camera in the shoot had issues as well so I have been forced to use a sequence and alternant timecodes to line everything up with my sound file.
Everything works well until I get to the subclip after the pause. I try to modify the alternant timecode to correspond with the sequence timecode but when I enter the approporate number FCP forces a different number to appear.
My hunch is that because these are subclips of the same captured clip I am not able to modify the timecode as I want to. Can anyone confirm this hunch?
And...what can I do about this? Do I have to recapture? I hope not. I have tried to create a new master clip in the modify window but the problem persists. I am so close to getting this into the multicam editor I can taste it. Thanks.

Solved it... I ended up having to re-capture the shot after the pause so it would be a seperate media file. I guess I could have copied the file outside of FCP, renamed and imported the file seperatly... I realize this problem was caused by not setting the capture up properly to treat the jump in time code appropriately.

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            at java.util.concurrent.SynchronousQueue.poll(SynchronousQueue.java:874)
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            at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:907)
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       java.lang.Thread.State: WAITING (on object monitor)
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       java.lang.Thread.State: TIMED_WAITING (on object monitor)
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            at java.util.TimerThread.mainLoop(Timer.java:509)
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       java.lang.Thread.State: WAITING (on object monitor)
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    def new generation   total 12544K, used 6205K [0x10010000, 0x10da0000, 0x12770000)
      eden space 11200K,  53% used [0x10010000, 0x105e2ff0, 0x10b00000)
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      to   space 1344K,   0% used [0x10b00000, 0x10b00000, 0x10c50000)
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