Sudden strange LR3 behavior

Greetings -
I've suddenly started having odd things happening when importing in LR 3.4.1. This started after updating to OS 10.6.7, and had been getting wierder after updating to 10.6.8. Ran the usual permission repairs before and after each update(combo). Same with each LR update. I also use Cocktail for periodic maitenance.
A few weeks ago I noticed that the names of files were from a previous import while doing some printing. The image was correct, but the name was wrong. After performing a recent import, I noticed that the backup import hadn't takem place(or went to somewhere other than wanted). I also noticed that instead of a single folder with the name, there were two unamed folders, broken down by day. If I checked "Into Subfolder", then the named folder would appear, but with the two subfolders still there. There are no subfolders in the original folder. I checked the previous three imports, and they too had subfolders according to date(different folder for each days images). All other previous imports are still as originally imported.
I use the Seth Resnick method, including keeping all image files on a seperate drive, with a corresponding backup drive, in a Macpro 3.0 Quad with 4 drives installed. I also download from cards to the desktop and import from there, rather than import strait from the card.
I went back to my Library drive, and in the next to last imported folder, there were images with file names from the import before that. There were also image files with the correct name for that folder, but the images were from a folder that I hadn't even imported yet. However, I had checked them out in Bridge(CS4).
Hopefully someone here can make some sense of this, and figure out what's going on. The more I try, the more confused I get. And as it's recommended to do everything through LR, what would be the best way to get everything back in order?
Thanks

Hi Geoff -
Sorry for the delay, and thanks for responding.
I'll attach a sceenshot showing the worst of it. The files labeled caplescreek that are in the jamestown_rail folder were placed there by LR, not by me(at least as far as I know). I always import the folders as-is. The jamestown images were imported after the caplescreek folder, with a week inbetween. When viewing the jamestown files in the Develop module, the files labeled caplescreek do not show up at the front, despite being listed in the same folder as the ones that do. When going through the files in the jamestown folder in the Develop module, files no. 0017 and 0019 show up fine, but what should be 0018 is labeled caplescreek(this is the caplescreek_001 file on the library drive). This is a two star filtered file, and this has happened to all two star files, and only two star files.All the files labeled caplescreek in the jamestown folder are two star rated jamestoen images.
Durring a recent import I noticed that in the 'To' column, the folder I was going to import was placed in the previous import's folder, when 'into subfolder' is checked. If I uncheck that, the new import moves to the top of the master folder for that year. This folder is a genaric folder with the date. If I input the folder name for the subfolder, LR generates the subfolder with the file folder under that. Seems that is OK, but wondering why LR doesn't just import the folder name and all. One more thing to double check.
Thanks again.
Cheers

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