Super Duper seems to be frozen

I bought a WD SE16 500 gig hard drive and used Super Duper to clone my original HD. But the progress bar has been stuck at "23.15 GB copied" for the last 30 minutes. Is this normal? This is my first time using Super Duper. Any advice would be greatly appreciated. Thanks!

Thanks for answering. Last night, I let Super Duper run its course for another hour or so. Then all of a sudden it says that 175 gigs has been copied, and it finished copying shortly thereafter. But now I have another problem.
Last night, I set the new hard drive as my start up disk. Then, I opened up the programs I normally use and "kept them in the dock". I restarted the computer with my newly copied hard drive as the new start up disk, but the dock wipes out everything I add to it and goes back to the default settings and programs. I've done this a few times already and it's always the same result: default dock settings and programs.
Now that I think about it. This happened once right before I cloned my original hard drive. At that time, I downloaded the latest update (security and quicktime). On top of that, keychain keeps popping up and asking me for the password. It never used to do that. Is anyone else having the same problems? Do you guys think it's because of the update or was something corrupted in the copying. Any advice? Thanks!
Power Mac Dual Processor 2 Ghz   Mac OS X (10.4.8)  

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