Sustain pedal not working with my MIDI setup

So, I'm using a Yamaha P-140 hooked up with my Macbook Pro using a Midi-USD cable. I'm mostly using it for Logic Pro X and Sibelius, and it works just fine. However when I use the sustain pedal, it's playing an E3 note and it's messing up all the sound adding a lot of reverb.
Now, this isn't a problem when I'm using the piano as it is. It's also not a problem with either Logic or Sibelius, cause when I'm testing it with the "Sound and MIDI Setup" app on Mac, the sustain pedal is recognized as one of the "hammers" on the keyboard.
I have no idea as how to fix this problem, and it's really annoying having to play super legato when I'm recording.
Thanks in advance.
Note: The keyboard have an "AUX Pedal" input and a "Sustain pedal" input.
USB MIDI Cable specs:
(As written on the package)
- Built-in driver
- USB powered and Class Complaint for true plug & play. Just connect to a computer USB socket for automatic installation of the driver.
- 1 in + 1 out MIDI interface; 16 MIDI input channels & 16 MIDI output channels
- LED's indicate power on, MIDI in signal and MIDI out signal.
- Supports Windows XP, Vista and Mac OS X operating systems
Aditional info:
Now, I've seen the event-recording in Logic for when I use the pedal, and it's picking up 2 different signals. The first one is a "Controller" (as it say under "status") with the info "Sustain", the next 2 have the status "Note" each one triggering an E3.
I looked it up and the pedal is a Yamaha FC3 half damper sustain pedal. I'm not an expert when it come to pedals, but I believe a half damper is a pedal with multiple trigger points? Giving you different amounts of sustain depending on how much you're "pressing it".
(Position 2 1 1  19 = pedal release)

Try deleting Logic's preferences... sounds like a control surface issue.
Delete the Logic 10 preferences file AND the shared control surfaces file.
In the Finder, choose Go > Go to Folder from the menu.
Type ~/Library/Preferences in the "Go to the folder" field.
Press the Go button.
Remove the  com.apple.logic10.plist  file from the Preferences folder. Note that if you have programmed any custom key commands, this will reset them to the defaults. You may wish to export your custom key command as a preset before performing this step. See the Logic Pro User Manual for details on how to do this.
If you are having trouble with a control surface in Logic Pro.
then delete the com.apple.logic.pro.cs file from the preferences folder.
Note: Delete both files, they will be rebuilt the next time Logic runs.

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