Sync problems when sending to soundtrack pro

I am currently having a problem with a mono track audio/video clip sliding out of sync when I send it to soundtrack pro as referenced file only with 10 sec handles. When I send the entire clip the sync problem doesn't occur.
I have used soundtrack pro before and never encountered this problem.
I'm on FCP 6.0.3.
Thanks.

Turns out the audio needed to be linked to the .motn sequence.

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